Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01001391.1 Corchorus olitorius cultivar O-4 contig01391, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 625

Length: 1042
ACGTcount: A:0.39, C:0.12, G:0.14, T:0.35


Found at i:343 original size:32 final size:32

Alignment explanation


    Indices: 301--361  Score: 95
    Period size: 32  Copynumber: 1.9  Consensus size: 32

        291 AAATATGTTT

                              *             
        301 GAAAAATAAGGATATAATGGTCGATTCAATTA
          1 GAAAAATAAGGATATAATAGTCGATTCAATTA

                *      *                 
        333 GAAATATAAGGGTATAATAGTCGATTCAA
          1 GAAAAATAAGGATATAATAGTCGATTCAA

        362 AAGTTTTACA


Statistics
Matches: 26,  Mismatches: 3, Indels: 0
        0.90            0.10        0.00

Matches are distributed among these distances:
  32   26  1.00

ACGTcount: A:0.46, C:0.07, G:0.20, T:0.28


Consensus pattern (32 bp):   
GAAAAATAAGGATATAATAGTCGATTCAATTA
Done.