Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01013910.1 Corchorus olitorius cultivar O-4 contig13943, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  52660

Tables:   1   

This is table  1  of  1  ( 16 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
366--579
57
3.8
57
96
1
385
26
16
21
36
1.94
564--705
35
3.9
38
89
9
224
27
15
21
35
1.93
690--789
25
4.0
25
77
17
102
35
16
25
24
1.95
767--831
30
2.0
31
85
14
87
26
15
23
35
1.94
1960--2175
86
2.5
86
97
0
405
43
6
14
35
1.72
9467--9506
20
2.0
20
100
0
80
30
10
10
50
1.69
12006--12079
28
2.7
27
75
4
76
37
12
22
27
1.90
15040--15065
13
2.0
13
100
0
52
30
23
7
38
1.83
15978--16015
2
20.0
2
84
10
53
47
2
0
50
1.15
16131--16234
52
2.0
52
98
0
199
28
16
23
31
1.96
18684--18788
53
2.0
50
89
5
156
48
6
20
23
1.73
22146--22181
2
18.0
2
94
0
63
50
2
0
47
1.15
36199--36223
10
2.5
10
100
0
50
0
8
0
92
0.40
36652--36687
2
18.0
2
100
0
72
50
0
0
50
1.00
51230--51323
45
2.2
43
90
7
147
38
22
5
34
1.77
52126--52169
2
23.0
2
90
9
74
52
0
0
47
1.00

Tables:   1

The End!