Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01013914.1 Corchorus olitorius cultivar O-4 contig13947, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  23606

Tables:   1   

This is table  1  of  1  ( 10 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
33--86
17
3.2
17
86
0
72
38
18
20
22
1.93
192--224
12
2.6
13
90
4
50
36
36
15
12
1.84
1937--1966
12
2.5
12
94
0
51
70
0
0
30
0.88
9051--9075
2
12.5
2
100
0
50
52
0
0
48
1.00
13797--13834
14
2.6
14
87
4
58
84
0
15
0
0.63
13795--13843
18
2.7
18
83
3
71
83
0
14
2
0.73
13984--14045
31
2.0
31
100
0
124
64
3
16
16
1.42
16105--16166
28
2.1
29
82
11
74
54
3
4
37
1.38
16866--16979
56
2.0
56
91
3
185
35
22
0
40
1.61
21537--21630
45
2.2
44
88
7
140
38
19
5
37
1.74

Tables:   1

The End!