Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01013915.1 Corchorus olitorius cultivar O-4 contig13948, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1706
ACGTcount: A:0.37, C:0.16, G:0.13, T:0.33


Found at i:268 original size:17 final size:17

Alignment explanation


    Indices: 229--271  Score: 50
    Period size: 17  Copynumber: 2.5  Consensus size: 17

        219 TCATTAAGCC

                       *    *
        229 TAATGTTTTATTACCAT
          1 TAATGTTTTATGACCAG

             *            *  
        246 TCATGTTTTATGACTAG
          1 TAATGTTTTATGACCAG

                     
        263 TAATGTTTT
          1 TAATGTTTT

        272 CCTCTTCAAA


Statistics
Matches: 21,  Mismatches: 5, Indels: 0
        0.81            0.19        0.00

Matches are distributed among these distances:
  17   21  1.00

ACGTcount: A:0.26, C:0.09, G:0.12, T:0.53


Consensus pattern (17 bp):   
TAATGTTTTATGACCAG
Done.