Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01013919.1 Corchorus olitorius cultivar O-4 contig13952, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  32632

Tables:   1   

This is table  1  of  1  ( 11 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
8904--8945
20
2.0
21
86
4
59
69
2
19
9
1.28
15298--15330
3
11.3
3
93
6
59
0
36
0
63
0.95
17844--17914
27
2.6
27
86
4
90
39
26
14
19
1.90
17869--17921
27
2.0
27
88
0
79
37
24
20
16
1.93
19021--19054
17
2.0
17
88
0
50
44
2
2
50
1.32
19396--19591
36
5.4
36
77
9
173
38
15
15
30
1.88
19397--19579
73
2.5
72
81
10
187
40
15
14
29
1.87
19637--19740
39
2.7
39
80
3
93
37
17
12
32
1.87
24705--24738
3
11.3
3
100
0
68
0
32
0
67
0.91
25392--25473
33
2.5
33
100
0
164
26
14
28
30
1.95
32470--32525
28
2.0
28
92
0
94
25
5
21
48
1.71

Tables:   1

The End!