Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01013922.1 Corchorus olitorius cultivar O-4 contig13955, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  28965

Tables:   1   

This is table  1  of  1  ( 17 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
283--313
2
15.0
2
93
6
53
48
0
3
48
1.17
462--495
5
6.8
5
87
12
52
44
0
17
38
1.49
462--510
10
4.6
11
81
18
52
46
0
16
36
1.47
3671--3701
14
2.2
14
100
0
62
32
0
22
45
1.53
6900--6925
13
2.0
13
100
0
52
46
7
7
38
1.61
6914--7156
126
1.9
126
97
0
459
39
11
12
36
1.79
9360--9737
178
2.1
177
84
4
501
37
15
13
33
1.87
10279--10599
178
1.8
178
87
2
484
36
15
12
35
1.86
10279--10662
178
2.2
177
82
3
457
38
15
13
33
1.85
9024--10870
925
2.0
922
91
1
2973
35
14
15
34
1.88
13017--13087
27
2.6
26
80
12
72
21
25
16
36
1.94
13038--13099
27
2.3
27
83
10
74
16
27
17
38
1.91
18441--18564
62
2.0
62
98
0
239
34
12
15
37
1.86
18802--18834
12
2.7
12
95
4
57
60
0
0
39
0.97
18801--18835
17
2.1
16
94
5
61
62
0
0
37
0.95
22185--22289
51
2.1
50
82
8
124
21
21
13
42
1.87
23044--23114
28
2.6
29
86
8
103
21
11
19
47
1.80

Tables:   1

The End!