genome.fa.s13924.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01013924.1 Corchorus olitorius cultivar O-4 contig13957, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  62169

Tables:   1   

This is table  1  of  1  ( 26 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4064--4135	31	2.3	31	82	2	81	15	20	27	36	1.93
4355--4395	21	1.9	22	90	5	66	9	14	29	46	1.77
19251--19281	16	2.0	15	93	6	53	64	0	0	35	0.94
20803--20883	39	2.1	39	95	0	144	29	13	13	43	1.83
23048--23076	1	29.0	1	100	0	58	100	0	0	0	0.00
29414--29441	13	2.2	13	100	0	56	7	35	10	46	1.66
31884--31915	9	3.8	9	92	8	50	59	0	0	40	0.97
37074--37124	19	2.7	19	77	14	61	50	1	0	47	1.12
38407--38439	2	17.0	2	87	6	50	51	0	0	48	1.00
39074--39190	61	1.9	60	82	5	146	37	17	19	25	1.93
39449--39490	19	2.3	18	80	15	50	23	7	2	66	1.28
41778--42319	22	25.0	21	70	13	226	35	16	9	38	1.81
41872--43071	44	27.9	44	66	16	226	35	17	9	37	1.82
42425--43073	22	29.8	21	66	16	154	35	17	10	37	1.83
42444--42570	65	1.9	66	80	1	148	35	14	11	39	1.81
42400--42565	87	1.9	87	82	2	208	34	14	11	39	1.82
42869--43077	66	3.1	66	77	9	201	36	18	10	34	1.85
43452--43479	13	2.2	13	100	0	56	46	0	14	39	1.44
44241--44352	56	2.0	56	98	0	215	41	8	12	36	1.74
44832--44922	45	2.0	45	100	0	182	30	24	6	38	1.81
45718--45770	18	2.9	17	88	5	61	22	39	7	30	1.82
45760--45797	15	2.5	15	91	0	58	23	23	7	44	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46332--46420	33	2.7	33	85	3	108	21	21	39	17	1.93
46362--46432	15	4.5	15	72	16	54	23	19	40	15	1.90
51609--51647	13	3.0	13	100	0	78	46	7	15	30	1.74
56180--56205	11	2.4	11	100	0	52	57	15	0	26	1.38

Tables:   1

The End!