Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01013926.1 Corchorus olitorius cultivar O-4 contig13959, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  46965

Tables:   1   

This is table  1  of  1  ( 44 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1614--1647
4
8.8
4
87
6
52
20
0
0
79
0.73
1703--1770
29
2.4
29
87
7
95
13
35
36
14
1.85
1751--1809
29
2.0
29
83
6
75
6
37
42
13
1.71
3585--3623
17
2.3
17
83
12
53
5
17
10
66
1.39
3875--3909
14
2.5
14
95
0
61
11
2
0
85
0.69
3874--3914
14
2.7
15
85
11
57
12
2
2
82
0.86
4388--4449
27
2.3
27
88
2
90
41
24
20
12
1.87
6160--6567
202
2.0
201
94
1
710
45
8
10
36
1.68
6639--6685
25
1.9
24
91
4
76
57
8
4
29
1.48
9037--9121
42
2.0
42
90
0
134
35
5
16
42
1.72
10422--10452
16
1.9
16
93
0
53
16
0
61
22
1.34
17930--18324
126
3.2
125
86
2
560
33
15
14
36
1.89
18721--18758
11
3.5
11
85
10
51
57
2
0
39
1.12
18841--18912
36
2.0
36
100
0
144
30
27
5
36
1.80
20683--20714
12
2.6
13
90
9
50
34
0
12
53
1.39
22743--22810
34
2.0
34
91
0
109
55
11
8
23
1.63
23522--23578
22
2.6
22
97
0
105
28
26
31
14
1.94
26058--26129
14
5.6
14
71
18
59
29
9
1
59
1.38
26071--26156
12
7.1
12
70
12
59
30
6
3
59
1.41
26071--26151
6
13.3
6
69
21
53
29
7
2
60
1.37
26042--26151
49
2.2
49
100
0
220
29
10
1
59
1.40
26319--26391
23
3.3
23
84
7
105
56
8
2
32
1.43
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
26322--26396
21
3.4
22
81
7
89
58
9
2
29
1.43
26319--26403
23
3.8
23
81
7
59
58
8
2
30
1.40
26868--26904
18
2.0
18
89
5
56
8
18
0
72
1.08
27942--28004
30
2.1
31
84
3
83
22
9
20
47
1.78
27732--28498
271
2.8
271
90
2
1141
30
12
19
38
1.88
28213--28275
30
2.1
31
84
3
83
22
9
20
47
1.78
27732--28498
135
5.7
135
91
2
1139
30
12
19
38
1.88
30991--31607
22
27.5
22
68
15
180
37
8
16
37
1.79
31419--31590
91
1.9
91
86
3
247
40
7
15
36
1.76
31438--31607
69
2.5
67
81
7
166
41
8
14
36
1.75
31574--31642
35
2.0
35
88
5
104
36
5
11
46
1.64
31631--31713
22
3.8
22
78
15
100
44
8
15
31
1.76
31729--31974
123
2.0
123
86
4
343
42
6
16
34
1.75
32064--32140
19
3.8
19
74
17
66
44
10
11
33
1.75
32110--32184
23
3.4
23
79
16
72
40
5
12
42
1.65
32197--32243
22
2.1
22
84
0
58
36
14
12
36
1.85
32415--32493
24
3.5
23
79
8
81
45
13
15
25
1.83
32933--32984
21
2.4
22
77
3
61
26
21
0
51
1.47
38453--38492
15
2.6
14
88
11
53
75
0
20
5
0.99
42240--42279
21
1.9
21
89
0
62
52
12
7
27
1.66
43979--44388
67
6.0
68
91
2
585
22
19
14
43
1.87
45690--45719
14
2.1
14
93
0
51
33
0
10
56
1.32

Tables:   1

The End!