Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01013927.1 Corchorus olitorius cultivar O-4 contig13960, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  55580

Tables:   1   

This is table  1  of  1  ( 17 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
212--248
16
2.3
16
95
0
65
0
13
0
86
0.57
212--247
11
3.4
11
92
3
56
0
13
0
86
0.58
3685--3714
15
2.0
15
93
0
51
13
10
6
70
1.34
7388--7534
52
2.9
53
84
11
161
37
14
17
29
1.90
7515--7590
36
2.1
36
87
4
109
42
14
11
31
1.82
15459--16395
465
2.0
467
96
2
1713
42
17
13
26
1.87
20287--20351
26
2.9
21
71
20
67
32
4
18
44
1.70
20299--20355
26
2.2
24
80
17
69
35
5
14
45
1.67
22012--22050
15
2.5
16
87
4
53
15
7
15
61
1.55
22377--22442
34
2.0
32
82
11
80
36
7
6
50
1.56
25487--25532
21
2.2
21
84
0
56
6
52
15
26
1.67
25729--25799
21
3.4
21
94
0
115
15
49
23
11
1.77
29061--29099
15
2.5
16
87
4
53
15
7
15
61
1.55
29428--30616
529
2.3
527
92
0
1966
32
16
14
36
1.90
30809--30848
18
2.2
18
90
0
62
32
47
5
15
1.66
31404--31454
24
2.1
24
96
0
93
25
11
9
52
1.68
41065--41100
19
1.9
18
88
5
54
33
22
2
41
1.68

Tables:   1

The End!