genome.fa.s13929.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01013929.1 Corchorus olitorius cultivar O-4 contig13962, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  160219

Tables:   1   

This is table  1  of  1  ( 49 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1974--2009	18	1.9	19	88	5	56	66	8	11	13	1.44
3674--3705	2	16.0	2	100	0	64	50	0	0	50	1.00
6836--7477	130	5.0	130	82	4	683	38	13	13	34	1.84
16994--17040	24	2.0	24	82	0	58	29	4	6	59	1.41
21487--21557	37	1.9	37	91	0	115	39	8	15	36	1.78
25413--25452	21	1.9	21	84	0	53	45	2	37	15	1.59
29134--29168	2	17.5	2	100	0	70	48	0	0	51	1.00
30680--30705	3	8.7	3	100	0	52	34	34	30	0	1.58
47446--47520	37	2.0	37	86	0	105	26	10	22	40	1.87
51268--51309	21	2.0	21	100	0	84	52	4	28	14	1.62
79163--79203	20	2.0	20	86	9	57	58	9	7	24	1.55
81110--81311	109	1.9	109	93	0	350	47	7	8	36	1.63
83793--83920	63	2.0	63	98	0	247	22	26	17	33	1.96
88587--88618	4	8.0	4	100	0	64	50	0	25	25	1.50
95000--95024	8	3.1	8	100	0	50	24	24	0	52	1.48
95726--95850	63	2.0	63	84	6	164	43	14	29	12	1.83
96684--96762	41	1.9	41	89	0	122	22	15	29	32	1.95
101770--101839	20	3.5	20	74	3	77	60	11	4	24	1.49
108346--108408	32	2.0	32	87	6	94	31	6	25	36	1.81
108346--108417	32	2.4	30	84	9	92	31	8	22	37	1.84
118801--118876	2	39.5	2	81	7	95	50	0	1	48	1.09
120934--120973	16	2.5	16	87	0	62	37	40	15	7	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
121768--121814	13	3.8	12	78	13	51	40	0	4	55	1.19
121949--121994	17	2.7	18	83	6	60	30	52	15	2	1.55
121983--122086	16	6.6	16	69	14	65	38	35	17	8	1.80
121983--122054	32	2.3	31	86	11	101	37	36	16	9	1.82
129495--129646	57	2.8	57	90	5	226	25	28	10	35	1.89
135690--135739	25	2.1	24	85	10	68	20	16	30	34	1.94
146893--146928	18	1.9	19	94	5	65	47	27	19	5	1.72
147595--147650	27	2.1	27	89	0	85	21	21	35	21	1.96
148429--148753	37	9.1	37	72	8	244	19	37	17	25	1.93
148429--148510	18	4.4	18	66	14	51	18	40	17	24	1.91
148538--148733	99	2.0	99	85	2	268	18	38	16	26	1.92
149163--149271	50	2.2	50	88	0	164	36	15	26	21	1.93
149225--149312	34	2.6	34	85	3	106	37	18	26	18	1.93
149407--149494	37	2.4	37	86	1	115	29	32	27	10	1.90
149500--149558	27	2.2	27	90	0	91	32	30	25	11	1.92
149592--149631	21	2.0	20	85	5	53	27	35	22	15	1.94
149443--149695	85	2.9	87	83	6	291	30	34	23	11	1.91
149782--149835	27	2.0	27	85	0	72	25	29	27	16	1.97
149834--149926	46	2.0	48	91	4	154	40	18	20	20	1.91
150052--150125	24	3.0	24	84	7	103	33	33	13	18	1.90
152962--152997	18	1.9	19	88	5	56	50	22	16	11	1.77
153665--153719	27	2.0	27	92	0	92	25	20	32	21	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
154005--154094	13	6.5	15	72	24	65	44	1	0	54	1.07
155129--155260	37	3.6	37	79	2	131	19	34	15	30	1.93
158454--158479	1	26.0	1	100	0	52	100	0	0	0	0.00
159721--159802	41	2.0	41	97	0	155	41	18	4	35	1.72
159779--160002	111	2.0	111	97	0	421	40	11	8	40	1.70

Tables:   1

The End!