Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01013930.1 Corchorus olitorius cultivar O-4 contig13963, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  26588

Tables:   1   

This is table  1  of  1  ( 22 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1026--1066
10
4.3
10
82
17
52
26
19
0
53
1.45
1028--1073
8
5.2
8
85
15
56
26
21
0
52
1.47
1028--1073
18
2.6
18
86
13
76
26
21
0
52
1.47
2122--2211
1
90.0
1
70
0
63
85
14
0
0
0.60
2123--2211
7
13.6
7
97
2
136
85
14
0
0
0.60
3005--3109
22
4.8
22
80
4
95
37
12
14
36
1.84
3005--3109
44
2.4
44
86
0
147
37
12
14
36
1.84
3139--3203
22
3.0
22
84
4
69
38
6
23
32
1.79
3151--3211
22
2.7
23
85
10
81
39
3
26
31
1.72
3022--3217
108
1.8
108
80
4
234
37
10
19
32
1.86
3249--3482
22
10.6
23
72
11
80
31
10
18
39
1.85
3324--3441
44
2.7
43
76
7
112
33
12
18
35
1.89
3340--3483
66
2.2
65
76
6
148
31
12
17
38
1.87
5211--5795
22
26.4
22
69
12
227
36
10
15
37
1.83
5229--5387
68
2.4
68
84
6
191
38
11
13
35
1.81
10594--10651
21
2.8
20
75
19
55
55
5
39
0
1.22
14684--14709
11
2.4
11
100
0
52
53
0
0
46
1.00
19147--19206
29
2.1
28
90
3
93
46
28
3
21
1.67
19247--19295
14
3.4
14
73
15
55
57
8
4
30
1.47
19243--19298
29
1.9
29
100
0
112
53
10
3
32
1.53
19319--19366
22
2.2
22
88
7
71
50
10
0
39
1.37
20116--20149
17
2.0
17
88
11
52
35
0
0
64
0.94

Tables:   1

The End!