Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: AWUE01013932.1 Corchorus olitorius cultivar O-4 contig13965, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 56567
ACGTcount: A:0.34, C:0.17, G:0.16, T:0.32
Found at i:1357 original size:329 final size:332
Alignment explanation
Indices: 613--3413 Score: 3356
Period size: 329 Copynumber: 8.5 Consensus size: 332
603 ATTATTGCAC
* *
613 TTGATTAGATGAATAAAGATATTTCAAGGAGTCTCGGCGCCAAAAATCATGCAAAACATAGCCGT
1 TTGATTAGATGAATAAAGATATTTCAAGGAGTCTTGGCGCCAAAAATCATGCAAAACAGAGCCGT
* * * * * *
678 GACTCTGGAATGCGTTTTTAGCCAAAAACCGAGATGGTTAGTACACAATATCGGCTAACATTTTG
66 GACCCTGGAACGCGTTTTTAGCCAAAAACCGTGATGGTTAGTACACGATTTCGGCTAAAATTTTG
* * * * * * *
743 CAAAAATTGATCCGAAAGATATTTCCTCAATTTTTGGCTAAAATTCTCGTAAAAAATATAGAATT
131 CAAAAATTGACCCGAAAGATATTTCCTCAATTTCTAGCGAAAATACTCATAAAAAATATAAAATT
* * * * *
808 CGAA-ATCAAAAAGATTGAAGGGCTTTTAACGCTTCTAATATTGTTTTGCCTATTTTT-TCAAAT
196 -TAACATCAAAAAGATTGAAGGACTTTTAACGCTTCTAATATCGTTTTTCATATTTTTCTCAAAT
* * * * * * *
871 TAATTTCTAATTAAATCGAAACAAGATTGAAATGCTCGTAAAAAGAAATCCTTAAATTTAATTTG
260 TAATTTCTAATTAAATCGAAACAAGATTCAGATGCACATAAAAACAAATCCTTAAATCTAATGTG
936 GCTGAGATT
325 GCTGAGA-T
* * *
945 TTG-TTAGATGAATATAGATATTTCAAGGAGTCTTGGCACCAAAAATCATGCAAAACTGAGCCG-
1 TTGATTAGATGAATAAAGATATTTCAAGGAGTCTTGGCGCCAAAAATCATGCAAAACAGAGCCGT
* * * * *
1008 GGCCCT-GACCGCCG-TTTTAGCCGAAAACCGTGATGTTTAGTACATGATTTCGGCTAAAATTTT
66 GACCCTGGAACG-CGTTTTTAGCCAAAAACCGTGATGGTTAGTACACGATTTCGGCTAAAATTTT
* * *
1071 GCAAAAATTGACCCGAAAGATTTTTCCTCGATTTCTAGCGAAAATACTTATAAAAAATATAAAAT
130 GCAAAAATTGACCCGAAAGATATTTCCTCAATTTCTAGCGAAAATACTCATAAAAAATATAAAAT
* * * * *
1136 TTAACGTCAAAAGGATTGGAGGACTTTTCACGCTT-TAATATCGTTTTTCATATTTTTCT-GAAT
195 TTAACATCAAAAAGATTGAAGGACTTTTAACGCTTCTAATATCGTTTTTCATATTTTTCTCAAAT
*
1199 TAATTTCTAATTAAATCG-AACAAGATTCAGATTCACATAAAAACAAATCCTTAAATCTAATGTG
260 TAATTTCTAATTAAATCGAAACAAGATTCAGATGCACATAAAAACAAATCCTTAAATCTAATGTG
*
1263 CCTGAGAT
325 GCTGAGAT
*
1271 TTGATTAGATGAATAAAGATATTTCAAGGAGTCTCGGCGCCAAAAATCATGCAAAACAGAGCCGT
1 TTGATTAGATGAATAAAGATATTTCAAGGAGTCTTGGCGCCAAAAATCATGCAAAACAGAGCCGT
* * *
1336 GACTCTGGAATGCGTTTTTAGCCAAAAACCGTGATGGTTAGTACACGATTTCGGCTAACATTTTG
66 GACCCTGGAACGCGTTTTTAGCCAAAAACCGTGATGGTTAGTACACGATTTCGGCTAAAATTTTG
* * * * * *
1401 CAAAAATTGATCCGAAAGATATTTCCTCCATTTTTGGCTAAAATACTCATAAAAAATATAGAATT
131 CAAAAATTGACCCGAAAGATATTTCCTCAATTTCTAGCGAAAATACTCATAAAAAATATAAAATT
* * * *
1466 CCTAA-ATCAAAAAGATTGAAGTG-TTTTTAACGCTTCTAATATTGTTTTGCCTATTTTT-TCAA
196 --TAACATCAAAAAGATTGAAG-GACTTTTAACGCTTCTAATATCGTTTTTCATATTTTTCTCAA
* * * * * * *
1528 ATTAATTTCTAATTAAATCGAAACAAGATTGAAATGCTCGTAAAAAGAAATCCTTAAATTTAATT
258 ATTAATTTCTAATTAAATCGAAACAAGATTCAGATGCACATAAAAACAAATCCTTAAATCTAATG
1593 TGGCTGAGATT
323 TGGCTGAGA-T
* * *
1604 TTG-TTAGATGAATATAGATATTTCAAGGAGTCTTGGCACCAAAAATCATGCAAAACTGAGCCG-
1 TTGATTAGATGAATAAAGATATTTCAAGGAGTCTTGGCGCCAAAAATCATGCAAAACAGAGCCGT
* * * * *
1667 GGCCCT-GAACGCCG-TTTTAGCCGAAAACCGTGATGGTTAGTAGATGATTTCGGCTAAAATATT
66 GACCCTGGAACG-CGTTTTTAGCCAAAAACCGTGATGGTTAGTACACGATTTCGGCTAAAATTTT
* * *
1730 GCAAAAATTGACCCGAAAGATTTTTCCTCGATTTATAGCGAAAATACTCATAAAAAATATAAAAT
130 GCAAAAATTGACCCGAAAGATATTTCCTCAATTTCTAGCGAAAATACTCATAAAAAATATAAAAT
* * * * * *
1795 TTAACGTCAAAAGGATTGGAGGACTTTTCACGCTT-AAATATCGTTTTTCATATTTTTCT-GAAT
195 TTAACATCAAAAAGATTGAAGGACTTTTAACGCTTCTAATATCGTTTTTCATATTTTTCTCAAAT
* * * *
1858 TAATTTCTAATTAAATCG-AACAAGATTCAGATTCACATTAAAACAAATCCCTAACTCTAATGTG
260 TAATTTCTAATTAAATCGAAACAAGATTCAGATGCACATAAAAACAAATCCTTAAATCTAATGTG
*
1922 TCTGAGAT
325 GCTGAGAT
* *
1930 TTGATTAGATGTATAAAGATATTTCAAGGAGTCTTGGCGCCAAAAATCATGTAAAACAGAGCCGT
1 TTGATTAGATGAATAAAGATATTTCAAGGAGTCTTGGCGCCAAAAATCATGCAAAACAGAGCCGT
* * * * *
1995 GACCCAGGAACACGTTTTTTAGGCAAAATCTGTGATGGTTAGTACACGATTTCGGCTAAAATTTT
66 GACCCTGGAACGCG-TTTTTAGCCAAAAACCGTGATGGTTAGTACACGATTTCGGCTAAAATTTT
* * * * *
2060 GCAAAAATTGACCCGAAAGATATTTGCTCAATTTCTGGCTAAAATACCCATAAAAAATATATAA-
130 GCAAAAATTGACCCGAAAGATATTTCCTCAATTTCTAGCGAAAATACTCATAAAAAATATAAAAT
* * * * *
2124 TTAGACATCAAAAAGATTGAAGGGCATTTAACGCTTATAATATTGTTTTTTC-TATTTTTTTCAA
195 TTA-ACATCAAAAAGATTGAAGGACTTTTAACGCTTCTAATATCG-TTTTTCATATTTTTCTCAA
* * * * *
2188 ATTAATTTCTAATTAAATCCAAACAAGATTCAGATGCTCGTAAAAACAAATCC-TAAATTTGATG
258 ATTAATTTCTAATTAAATCGAAACAAGATTCAGATGCACATAAAAACAAATCCTTAAATCTAATG
*
2252 TGGCTTAGAT
323 TGGCTGAGAT
* * * * ** *
2262 TTGGTTAGATGAATATAGATATTTCAAGGAGTCTTGGCACCAAAAATCAAGCAAAATTGAGTCG-
1 TTGATTAGATGAATAAAGATATTTCAAGGAGTCTTGGCGCCAAAAATCATGCAAAACAGAGCCGT
* * *
2326 GGCCCT-GAACGCCG-TTTTAGCCGAAAACCGTGATGGTTAGTACATGATTTCGGCTAAAATTTT
66 GACCCTGGAACG-CGTTTTTAGCCAAAAACCGTGATGGTTAGTACACGATTTCGGCTAAAATTTT
* * * * *
2389 GCAAAAATTGAACCGAAAGATTTTTCCTCGATTTCTAGCGAAAAAAACTCATAAAAAATATATAA
130 GCAAAAATTGACCCGAAAGATATTTCCTCAATTTCTAGCG-AAAATACTCATAAAAAATATAAAA
* * * * * *
2454 TTCAACGTCAAAAGGATTGGAGGACTTTTCACGCTT-TAATATCG-TTTTCATATTTTTCT-GAA
194 TTTAACATCAAAAAGATTGAAGGACTTTTAACGCTTCTAATATCGTTTTTCATATTTTTCTCAAA
* *
2516 TTAATTTCTAATTAAATCG-AACAAGATTCAGATTCACATAAAAACAAATCCTTAAATCTAATTT
259 TTAATTTCTAATTAAATCGAAACAAGATTCAGATGCACATAAAAACAAATCCTTAAATCTAATGT
*
2580 GCCTGAGAT
324 GGCTGAGAT
* * * *
2589 TTGATTAGATGAATAAAGATGTTTCAAGGAGTCTCGGCGCAAAAAATCATGCAAAACATAGCCGT
1 TTGATTAGATGAATAAAGATATTTCAAGGAGTCTTGGCGCCAAAAATCATGCAAAACAGAGCCGT
* * * * **
2654 GACTCTGGAATGCGTTTTTAGCCAAAAACCGTGACGGTTAGTACACGATTTCAGCTAATGTTTTG
66 GACCCTGGAACGCGTTTTTAGCCAAAAACCGTGATGGTTAGTACACGATTTCGGCTAAAATTTTG
* * ** * * * *
2719 TAAATATTGATTCGAAAGATATTTCCTCAATTTTTGGCTAAAATACTCATAAAAAATATAGAATT
131 CAAAAATTGACCCGAAAGATATTTCCTCAATTTCTAGCGAAAATACTCATAAAAAATATAAAATT
* * * *
2784 CCTAA-ATCAAAAAGATTGAAGGGCTTTTAACGCTTCTAATATTGTTTTGCCTATTTTT-TCAAA
196 --TAACATCAAAAAGATTGAAGGACTTTTAACGCTTCTAATATCGTTTTTCATATTTTTCTCAAA
* * * * * * *
2847 TTATTTTCTAATTAAATCGAAACAAGATTCAGATGCTCGTTAAAACAAATCC-TGAATTTGATGT
259 TTAATTTCTAATTAAATCGAAACAAGATTCAGATGCACATAAAAACAAATCCTTAAATCTAATGT
*
2911 GGCTGATAT
324 GGCTGAGAT
* * * * * *
2920 TTGGTTAGATGAATATAGATATTTCAAGGAGTCTTGGCACCAAAAATCAAGCAAAACTGAGTCG-
1 TTGATTAGATGAATAAAGATATTTCAAGGAGTCTTGGCGCCAAAAATCATGCAAAACAGAGCCGT
* * * * *
2984 GGCCCT-GAACGCCG-TTTCAGCCGAAAACCGTGATGCATTAGTACATGATTTCGGCTAAAATTT
66 GACCCTGGAACG-CGTTTTTAGCCAAAAACCGTGATG-GTTAGTACACGATTTCGGCTAAAATTT
* * * * * *
3047 TGTAAAAATTGACCCGAAAGATTTTTCCTCGATTTTTAGCGAAAAAACTCATAAAAAATAGAAAA
129 TGCAAAAATTGACCCGAAAGATATTTCCTCAATTTCTAGCGAAAATACTCATAAAAAATATAAAA
* * * * * *
3112 TTCAACGTCAAAATGATTGGAGGACTTTTCACGCTT-TAATATCGTTTTTCATATTTTTCT-GAA
194 TTTAACATCAAAAAGATTGAAGGACTTTTAACGCTTCTAATATCGTTTTTCATATTTTTCTCAAA
* * * *
3175 TT-AGTTCTTAATTAAATCGAAACAAGATTCAGATCCACATAAAAACAAATCCTTAACTCTAATC
259 TTAATTTC-TAATTAAATCGAAACAAGATTCAGATGCACATAAAAACAAATCCTTAAATCTAATG
*
3239 TGCCTGAGAT
323 TGGCTGAGAT
* * *
3249 TTGATTAGATGTATAAAGATATTTCAAGGAGTCTCGGTGCCAAAAATCATGCAAAACAGAGCCGT
1 TTGATTAGATGAATAAAGATATTTCAAGGAGTCTTGGCGCCAAAAATCATGCAAAACAGAGCCGT
* * * *
3314 GACCCAGGAACACGTTTTTTAGGCAAAAACCGCGATGGTTAGTACACGATTTCGGCTAAAATTTT
66 GACCCTGGAACGCG-TTTTTAGCCAAAAACCGTGATGGTTAGTACACGATTTCGGCTAAAATTTT
*
3379 GCAAAAATTGACCCGAAAGATATTTGCTCAATTTC
130 GCAAAAATTGACCCGAAAGATATTTCCTCAATTTC
3414 ACGCTTTAGT
Statistics
Matches: 2077, Mismatches: 340, Indels: 105
0.82 0.13 0.04
Matches are distributed among these distances:
326 37 0.02
327 293 0.14
328 200 0.10
329 569 0.27
330 414 0.20
331 287 0.14
332 245 0.12
333 32 0.02
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (332 bp):
TTGATTAGATGAATAAAGATATTTCAAGGAGTCTTGGCGCCAAAAATCATGCAAAACAGAGCCGT
GACCCTGGAACGCGTTTTTAGCCAAAAACCGTGATGGTTAGTACACGATTTCGGCTAAAATTTTG
CAAAAATTGACCCGAAAGATATTTCCTCAATTTCTAGCGAAAATACTCATAAAAAATATAAAATT
TAACATCAAAAAGATTGAAGGACTTTTAACGCTTCTAATATCGTTTTTCATATTTTTCTCAAATT
AATTTCTAATTAAATCGAAACAAGATTCAGATGCACATAAAAACAAATCCTTAAATCTAATGTGG
CTGAGAT
Found at i:3098 original size:658 final size:658
Alignment explanation
Indices: 613--3412 Score: 4546
Period size: 659 Copynumber: 4.2 Consensus size: 658
603 ATTATTGCAC
*
613 TTGATTAGATGAATAAAGATATTTCAAGGAGTCTCGGCGCCAAAAATCATGCAAAACATAGCCGT
1 TTGATTAGATGAATAAAGATATTTCAAGGAGTCTCGGCGCCAAAAATCATGCAAAACAGAGCCGT
* * * *
678 GACTCTGGAATGCGTTTTTAGCCAAAAACCGAGATGGTTAGTACACAATATCGGCTAACATTTTG
66 GACTCTGGAATGCGTTTTTAGCCAAAAACCGTGATGGTTAGTACACGATTTCGGCTAAAATTTTG
* *
743 CAAAAATTGATCCGAAAGATATTTCCTCAATTTTTGGCTAAAATTCTCGTAAAAAATATAGAATT
131 CAAAAATTGATCCGAAAGATATTTCCTCAATTTTTGGCTAAAATACTCATAAAAAATATAGAATT
808 CGAAATCAAAAAGATTGAAGGGCTTTTAACGCTTCTAATATTGTTTTGCCTATTTTTTCAAATTA
196 CGAAATCAAAAAGATTGAAGGGCTTTTAACGCTTCTAATATTGTTTTGCCTATTTTTTCAAATTA
* * *
873 ATTTCTAATTAAATCGAAACAAGATTGAAATGCTCGTAAAAAGAAATCCTTAAATTTAATTTGGC
261 ATTTCTAATTAAATCGAAACAAGATTCAAATGCTCGTAAAAACAAATCCTTAAATTTAATGTGGC
* *
938 TGAGATTTTGTTAGATGAATATAGATATTTCAAGGAGTCTTGGCACCAAAAATCATGCAAAACTG
326 TGAGATTTGGTTAGATGAATATAGATATTTCAAGGAGTCTTGGCACCAAAAATCAAGCAAAACTG
* *
1003 AGCCGGGCCCTGACCGCCGTTTTAGCCGAAAACCGTGATGTTTAGTACATGATTTCGGCTAAAAT
391 AGCCGGGCCCTGAACGCCGTTTTAGCCGAAAACCGTGATGGTTAGTACATGATTTCGGCTAAAAT
* *
1068 TTTGCAAAAATTGACCCGAAAGATTTTTCCTCGATTTCTAGCGAAAATACTTATAAAAAATATAA
456 TTTGCAAAAATTGACCCGAAAGATTTTTCCTCGATTTCTAGCGAAAAAACTCATAAAAAATATAA
*
1133 AATTTAACGTCAAAAGGATTGGAGGACTTTTCACGCTTTAATATCGTTTTTCATATTTTTCTGAA
521 AATTCAACGTCAAAAGGATTGGAGGACTTTTCACGCTTTAATATCGTTTTTCATATTTTTCTGAA
1198 TTAATTTCTAATTAAATCGAACAAGATTCAGATTCACATAAAAACAAATCCTTAAATCTAATGTG
586 TTAATTTCTAATTAAATCGAACAAGATTCAGATTCACATAAAAACAAATCCTTAAATCTAATGTG
1263 CCTGAGAT
651 CCTGAGAT
1271 TTGATTAGATGAATAAAGATATTTCAAGGAGTCTCGGCGCCAAAAATCATGCAAAACAGAGCCGT
1 TTGATTAGATGAATAAAGATATTTCAAGGAGTCTCGGCGCCAAAAATCATGCAAAACAGAGCCGT
*
1336 GACTCTGGAATGCGTTTTTAGCCAAAAACCGTGATGGTTAGTACACGATTTCGGCTAACATTTTG
66 GACTCTGGAATGCGTTTTTAGCCAAAAACCGTGATGGTTAGTACACGATTTCGGCTAAAATTTTG
*
1401 CAAAAATTGATCCGAAAGATATTTCCTCCATTTTTGGCTAAAATACTCATAAAAAATATAGAATT
131 CAAAAATTGATCCGAAAGATATTTCCTCAATTTTTGGCTAAAATACTCATAAAAAATATAGAATT
* * *
1466 CCTAAATCAAAAAGATTGAAGTGTTTTTAACGCTTCTAATATTGTTTTGCCTATTTTTTCAAATT
196 -CGAAATCAAAAAGATTGAAGGGCTTTTAACGCTTCTAATATTGTTTTGCCTATTTTTTCAAATT
* * *
1531 AATTTCTAATTAAATCGAAACAAGATTGAAATGCTCGTAAAAAGAAATCCTTAAATTTAATTTGG
260 AATTTCTAATTAAATCGAAACAAGATTCAAATGCTCGTAAAAACAAATCCTTAAATTTAATGTGG
* *
1596 CTGAGATTTTGTTAGATGAATATAGATATTTCAAGGAGTCTTGGCACCAAAAATCATGCAAAACT
325 CTGAGATTTGGTTAGATGAATATAGATATTTCAAGGAGTCTTGGCACCAAAAATCAAGCAAAACT
*
1661 GAGCCGGGCCCTGAACGCCGTTTTAGCCGAAAACCGTGATGGTTAGTAGATGATTTCGGCTAAAA
390 GAGCCGGGCCCTGAACGCCGTTTTAGCCGAAAACCGTGATGGTTAGTACATGATTTCGGCTAAAA
* * *
1726 TATTGCAAAAATTGACCCGAAAGATTTTTCCTCGATTTATAGCGAAAATACTCATAAAAAATATA
455 TTTTGCAAAAATTGACCCGAAAGATTTTTCCTCGATTTCTAGCGAAAAAACTCATAAAAAATATA
* *
1791 AAATTTAACGTCAAAAGGATTGGAGGACTTTTCACGCTTAAATATCGTTTTTCATATTTTTCTGA
520 AAATTCAACGTCAAAAGGATTGGAGGACTTTTCACGCTTTAATATCGTTTTTCATATTTTTCTGA
* * *
1856 ATTAATTTCTAATTAAATCGAACAAGATTCAGATTCACATTAAAACAAATCCCTAACTCTAATGT
585 ATTAATTTCTAATTAAATCGAACAAGATTCAGATTCACATAAAAACAAATCCTTAAATCTAATGT
*
1921 GTCTGAGAT
650 GCCTGAGAT
* * *
1930 TTGATTAGATGTATAAAGATATTTCAAGGAGTCTTGGCGCCAAAAATCATGTAAAACAGAGCCGT
1 TTGATTAGATGAATAAAGATATTTCAAGGAGTCTCGGCGCCAAAAATCATGCAAAACAGAGCCGT
* * ** * * *
1995 GACCCAGGAACACGTTTTTTAGGCAAAATCTGTGATGGTTAGTACACGATTTCGGCTAAAATTTT
66 GACTCTGGAATGCG-TTTTTAGCCAAAAACCGTGATGGTTAGTACACGATTTCGGCTAAAATTTT
* * * * *
2060 GCAAAAATTGACCCGAAAGATATTTGCTCAATTTCTGGCTAAAATACCCATAAAAAATATATAAT
130 GCAAAAATTGATCCGAAAGATATTTCCTCAATTTTTGGCTAAAATACTCATAAAAAATATAGAAT
* * * * **
2125 TAGACATCAAAAAGATTGAAGGGCATTTAACGCTTATAATATTGTTTTTTCTATTTTTTTCAAAT
195 TCGAAATCAAAAAGATTGAAGGGCTTTTAACGCTTCTAATATTGTTTTGCCTA-TTTTTTCAAAT
* * *
2190 TAATTTCTAATTAAATCCAAACAAGATTCAGATGCTCGTAAAAACAAATCC-TAAATTTGATGTG
259 TAATTTCTAATTAAATCGAAACAAGATTCAAATGCTCGTAAAAACAAATCCTTAAATTTAATGTG
* *
2254 GCTTAGATTTGGTTAGATGAATATAGATATTTCAAGGAGTCTTGGCACCAAAAATCAAGCAAAAT
324 GCTGAGATTTGGTTAGATGAATATAGATATTTCAAGGAGTCTTGGCACCAAAAATCAAGCAAAAC
*
2319 TGAGTCGGGCCCTGAACGCCGTTTTAGCCGAAAACCGTGATGGTTAGTACATGATTTCGGCTAAA
389 TGAGCCGGGCCCTGAACGCCGTTTTAGCCGAAAACCGTGATGGTTAGTACATGATTTCGGCTAAA
*
2384 ATTTTGCAAAAATTGAACCGAAAGATTTTTCCTCGATTTCTAGCGAAAAAAACTCATAAAAAATA
454 ATTTTGCAAAAATTGACCCGAAAGATTTTTCCTCGATTTCTAGCG-AAAAAACTCATAAAAAATA
*
2449 TATAATTCAACGTCAAAAGGATTGGAGGACTTTTCACGCTTTAATATCG-TTTTCATATTTTTCT
518 TAAAATTCAACGTCAAAAGGATTGGAGGACTTTTCACGCTTTAATATCGTTTTTCATATTTTTCT
2513 GAATTAATTTCTAATTAAATCGAACAAGATTCAGATTCACATAAAAACAAATCCTTAAATCTAAT
583 GAATTAATTTCTAATTAAATCGAACAAGATTCAGATTCACATAAAAACAAATCCTTAAATCTAAT
*
2578 TTGCCTGAGAT
648 GTGCCTGAGAT
* * *
2589 TTGATTAGATGAATAAAGATGTTTCAAGGAGTCTCGGCGCAAAAAATCATGCAAAACATAGCCGT
1 TTGATTAGATGAATAAAGATATTTCAAGGAGTCTCGGCGCCAAAAATCATGCAAAACAGAGCCGT
* * **
2654 GACTCTGGAATGCGTTTTTAGCCAAAAACCGTGACGGTTAGTACACGATTTCAGCTAATGTTTTG
66 GACTCTGGAATGCGTTTTTAGCCAAAAACCGTGATGGTTAGTACACGATTTCGGCTAAAATTTTG
* * *
2719 TAAATATTGATTCGAAAGATATTTCCTCAATTTTTGGCTAAAATACTCATAAAAAATATAGAATT
131 CAAAAATTGATCCGAAAGATATTTCCTCAATTTTTGGCTAAAATACTCATAAAAAATATAGAATT
*
2784 CCTAAATCAAAAAGATTGAAGGGCTTTTAACGCTTCTAATATTGTTTTGCCTATTTTTTCAAATT
196 -CGAAATCAAAAAGATTGAAGGGCTTTTAACGCTTCTAATATTGTTTTGCCTATTTTTTCAAATT
* * * * *
2849 ATTTTCTAATTAAATCGAAACAAGATTCAGATGCTCGTTAAAACAAATCC-TGAATTTGATGTGG
260 AATTTCTAATTAAATCGAAACAAGATTCAAATGCTCGTAAAAACAAATCCTTAAATTTAATGTGG
*
2913 CTGATATTTGGTTAGATGAATATAGATATTTCAAGGAGTCTTGGCACCAAAAATCAAGCAAAACT
325 CTGAGATTTGGTTAGATGAATATAGATATTTCAAGGAGTCTTGGCACCAAAAATCAAGCAAAACT
* * *
2978 GAGTCGGGCCCTGAACGCCGTTTCAGCCGAAAACCGTGATGCATTAGTACATGATTTCGGCTAAA
390 GAGCCGGGCCCTGAACGCCGTTTTAGCCGAAAACCGTGATG-GTTAGTACATGATTTCGGCTAAA
* * *
3043 ATTTTGTAAAAATTGACCCGAAAGATTTTTCCTCGATTTTTAGCGAAAAAACTCATAAAAAATAG
454 ATTTTGCAAAAATTGACCCGAAAGATTTTTCCTCGATTTCTAGCGAAAAAACTCATAAAAAATAT
*
3108 AAAATTCAACGTCAAAATGATTGGAGGACTTTTCACGCTTTAATATCGTTTTTCATATTTTTCTG
519 AAAATTCAACGTCAAAAGGATTGGAGGACTTTTCACGCTTTAATATCGTTTTTCATATTTTTCTG
* * *
3173 AATT-AGTTCTTAATTAAATCGAAACAAGATTCAGATCCACATAAAAACAAATCCTTAACTCTAA
584 AATTAATTTC-TAATTAAATCG-AACAAGATTCAGATTCACATAAAAACAAATCCTTAAATCTAA
*
3237 TCTGCCTGAGAT
647 TGTGCCTGAGAT
* *
3249 TTGATTAGATGTATAAAGATATTTCAAGGAGTCTCGGTGCCAAAAATCATGCAAAACAGAGCCGT
1 TTGATTAGATGAATAAAGATATTTCAAGGAGTCTCGGCGCCAAAAATCATGCAAAACAGAGCCGT
* * ** * *
3314 GACCCAGGAACACGTTTTTTAGGCAAAAACCGCGATGGTTAGTACACGATTTCGGCTAAAATTTT
66 GACTCTGGAATGCG-TTTTTAGCCAAAAACCGTGATGGTTAGTACACGATTTCGGCTAAAATTTT
* *
3379 GCAAAAATTGACCCGAAAGATATTTGCTCAATTT
130 GCAAAAATTGATCCGAAAGATATTTCCTCAATTT
3413 CACGCTTTAG
Statistics
Matches: 1990, Mismatches: 142, Indels: 17
0.93 0.07 0.01
Matches are distributed among these distances:
658 532 0.27
659 1036 0.52
660 349 0.18
661 73 0.04
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (658 bp):
TTGATTAGATGAATAAAGATATTTCAAGGAGTCTCGGCGCCAAAAATCATGCAAAACAGAGCCGT
GACTCTGGAATGCGTTTTTAGCCAAAAACCGTGATGGTTAGTACACGATTTCGGCTAAAATTTTG
CAAAAATTGATCCGAAAGATATTTCCTCAATTTTTGGCTAAAATACTCATAAAAAATATAGAATT
CGAAATCAAAAAGATTGAAGGGCTTTTAACGCTTCTAATATTGTTTTGCCTATTTTTTCAAATTA
ATTTCTAATTAAATCGAAACAAGATTCAAATGCTCGTAAAAACAAATCCTTAAATTTAATGTGGC
TGAGATTTGGTTAGATGAATATAGATATTTCAAGGAGTCTTGGCACCAAAAATCAAGCAAAACTG
AGCCGGGCCCTGAACGCCGTTTTAGCCGAAAACCGTGATGGTTAGTACATGATTTCGGCTAAAAT
TTTGCAAAAATTGACCCGAAAGATTTTTCCTCGATTTCTAGCGAAAAAACTCATAAAAAATATAA
AATTCAACGTCAAAAGGATTGGAGGACTTTTCACGCTTTAATATCGTTTTTCATATTTTTCTGAA
TTAATTTCTAATTAAATCGAACAAGATTCAGATTCACATAAAAACAAATCCTTAAATCTAATGTG
CCTGAGAT
Found at i:3977 original size:602 final size:599
Alignment explanation
Indices: 2845--4015 Score: 1430
Period size: 602 Copynumber: 1.9 Consensus size: 599
2835 TATTTTTTCA
* * * * * * *
2845 AATTATTTTCTAATTAAATCGAAACAAGATTCAGATGCTCGTTAAAACAAATCCTGAATTTGATG
1 AATTAATTTCTAATTAAATCGAAACAAGATTCAGATGCACATAAAAACAAATCCTAAATCTAATG
* * * * * *
2910 TGGCTGATATTTGGTTAGATGAATATAGATATTTCAAGGAGTCTTGGCACCAAAAATCAAGCAAA
66 TGCCTGAGATTTGATTAGATGAATAAAGATATTTCAAGGAGTCTCGGCACAAAAAATCAAGCAAA
* * * *
2975 ACTGAGTCGGGCCCTGAACGCCGTTTCAGCCGAAAACCGTGATGCATTAGTACATGATTTCGGCT
131 ACAGAGTCGGACCCTGAACGCCGTTTCAGCCAAAAACCGTGATGCATTAGTACACGATTTCGGCT
* * * * * *
3040 AAAATTTTGTAAAAATTGACCCGAAAGATTTTTCCTCGATTTTTAGCGAAAAAACTCATAAAAAA
196 AAAATTTTGCAAAAATTGACACGAAAGATATTTCCTCCATTTTTAGCCAAAAAACTCAGAAAAAA
* * * *
3105 TAGAAAATTCAACGTCAAAATGATTGGAGGACTTTTCACGCTTTAATATCGTTTTTCATATTTTT
261 TAGAAAATTCAACATCAAAATGATTGAAGGACTTTTAACGCTTTAATATCGTTTTGCATATTTTT
* *
3170 CTGAATTAGTTCTTAATTAAATCGAAACAAGATTCAGATCCACATAAAAACAAATCCTTAACTCT
326 CTAAATTAGTTCTTAATTAAATCGAAACAAGATTCAGATCCACATAAAAACAAATCCTTAAATCT
* * **
3235 AATCTGCCTGAGATTTGATTAGATGTATAAAGATATTTCAAGGAGTCTCGGTGCCAAAAATCATG
391 AATCTGACTGAGATTTGATTAGATGAATAAAGATATTTCAAGGAGTCTCGGCACCAAAAATCATG
*
3300 CAAAACAGAGCCGTGACCCAGGAACACGTTTTTTAGGCAAAAACCGCGATGGTTAGTACACGATT
456 CAAAACAGAGCCGTGACCCAGGAACACG-TTTTTAGCCAAAAACCGCGATGGTTAGTACACGATT
*
3365 TCGGCTAAAATTTTGCAAAAATTGACCCGAAAGATATTTGCTCAATTTCACGCTTTAGTATCGTT
520 TCGGCTAAAATTTTGCAAAAATTGACCAGAAAGATATTTGCTCAATTTCACGCTTTAGTATCGTT
3430 TTTCATATTTTTCTG
585 TTTCATATTTTTCTG
* *
3445 AATTAATTTCTAATTAAATTGAAACAAGATTCAGATTCACATAAAAACAAATCCTTAAATCTAAT
1 AATTAATTTCTAATTAAATCGAAACAAGATTCAGATGCACATAAAAACAAATCC-TAAATCTAAT
** * *
3510 GTGCCTGAGATTTGATTAGATGAATAAAGATATTTCAAGGAGTCTCGGGGCAAAAAATTATGCAA
65 GTGCCTGAGATTTGATTAGATGAATAAAGATATTTCAAGGAGTCTCGGCACAAAAAATCAAGCAA
* * * * * *
3575 AAGAGAGTTGTGACTCTGGAATG-CGTTTTTAGCCAAAAACCGTGATG-GTTAGTACACGATTTC
130 AACAGAGTCG-GACCCT-GAACGCCG-TTTCAGCCAAAAACCGTGATGCATTAGTACACGATTTC
* * *
3638 GGCTAACATTTTGCAAAAATTGATACGAAAGATATTTCCTCCATTTTT-GCCCAAAATACTCAGA
192 GGCTAAAATTTTGCAAAAATTGACACGAAAGATATTTCCTCCATTTTTAG-CCAAAAAACTCAGA
* * ** *
3702 AAAAATATAGAATTCCTAA-ATCAGAAA-GATTGAAGGGTTTTTAACGCTTCTAATATTGTTTTG
256 AAAAATAGAAAATT-C-AACATCA-AAATGATTGAAGGACTTTTAACGCTT-TAATATCGTTTTG
* * * * * * *
3765 CCTAATTTTT-TCAAATTAATT-TCTAATTAAATCGAAACAAGATTGAGATGCTCGTAAAAAGAA
317 CAT-ATTTTTCT-AAATTAGTTCT-TAATTAAATCGAAACAAGATTCAGATCCACATAAAAACAA
* * * * *
3828 ATCCTTAAATTTTATTTGACTGAGATTTTG-TTAGATGAATATAGATATTTCAAGGAGTCTTGGC
379 ATCCTTAAATCTAATCTGACTGAGA-TTTGATTAGATGAATAAAGATATTTCAAGGAGTCTCGGC
* * * * *
3892 ACCAAAAATCATGCAAAACTGAGCCAG-G-CCC-TGAACGCCG-TTTTAGCCGAAAACCGTGATG
443 ACCAAAAATCATGCAAAACAGAGCC-GTGACCCAGGAAC-ACGTTTTTAGCCAAAAACCGCGATG
* * * *
3953 GTTAGTACATGATTTCGGCTAAAATTTTGCAAAAATTGAGCAGAAAGATTTTTGCTCGATTTC
506 GTTAGTACACGATTTCGGCTAAAATTTTGCAAAAATTGACCAGAAAGATATTTGCTCAATTTC
4016 TAGCAAAAAT
Statistics
Matches: 480, Mismatches: 76, Indels: 28
0.82 0.13 0.05
Matches are distributed among these distances:
600 48 0.10
601 70 0.15
602 161 0.34
603 49 0.10
604 25 0.05
605 122 0.25
606 5 0.01
ACGTcount: A:0.36, C:0.16, G:0.17, T:0.32
Consensus pattern (599 bp):
AATTAATTTCTAATTAAATCGAAACAAGATTCAGATGCACATAAAAACAAATCCTAAATCTAATG
TGCCTGAGATTTGATTAGATGAATAAAGATATTTCAAGGAGTCTCGGCACAAAAAATCAAGCAAA
ACAGAGTCGGACCCTGAACGCCGTTTCAGCCAAAAACCGTGATGCATTAGTACACGATTTCGGCT
AAAATTTTGCAAAAATTGACACGAAAGATATTTCCTCCATTTTTAGCCAAAAAACTCAGAAAAAA
TAGAAAATTCAACATCAAAATGATTGAAGGACTTTTAACGCTTTAATATCGTTTTGCATATTTTT
CTAAATTAGTTCTTAATTAAATCGAAACAAGATTCAGATCCACATAAAAACAAATCCTTAAATCT
AATCTGACTGAGATTTGATTAGATGAATAAAGATATTTCAAGGAGTCTCGGCACCAAAAATCATG
CAAAACAGAGCCGTGACCCAGGAACACGTTTTTAGCCAAAAACCGCGATGGTTAGTACACGATTT
CGGCTAAAATTTTGCAAAAATTGACCAGAAAGATATTTGCTCAATTTCACGCTTTAGTATCGTTT
TTCATATTTTTCTG
Found at i:4278 original size:331 final size:329
Alignment explanation
Indices: 3410--8735 Score: 4420
Period size: 331 Copynumber: 16.1 Consensus size: 329
3400 ATTTGCTCAA
* *
3410 TTTCACGCTTTAGTATCGTTTTTCATATTTTTCTGAATTAATTTCTAATTAAATTGAAACAAGAT
1 TTTCACGCTTTAATATCGTTTTTCATATTTTTCTGAATTAATTTCTAATTAAATCGAAACAAGAT
* * * * * *
3475 TCAGATTCACATAAAAACAAATCCTTAAATCTAATGTGCCTGAGATTTGATTAGATGAATAAAGA
66 TCAGATGCTCGTAAAAACAAATCCTTAAATCCAATGTGGCTGAGATTTGATTAGATGAATATAGA
* * * ** * * * * *
3540 TATTTCAAGGAGTCTCGGGGCAAAAAATTATGCAAAAGAGAGTTGTGACTCTGGAATGCGTTTTT
131 TATTTCAAGGAGTCTCGGAGCCAAAAATCATGCAAAACTGAGTCG-GGCCCCGGAACGCGTTTTT
* *
3605 AGCCAAAAACCGTGATGGTTAGTACACGATTTCGGCTAACATTTTGCAAAAATTGA-TACGAAAG
195 AGCCAAAAACCGTGATGGTTAGTACACGATTTCGGCTAAAATTTTGCAAAAATTGACCA-GAAAG
* * * * * *
3669 ATATTTCCTCCATTTTT-GCCCAAAATACTCAGAAAAAATATAGAATTCCTAA-ATCAGAAAGAT
259 ATTTTTCCTCAATTTTTAG-CTAAAATACTCATAAAAAATATATAATT-C-AACATCAAAAAGAT
**
3732 TGAAGGGTT
321 TGAAGGACT
* * * * *
3741 TTTAACGCTTCTAATATTGTTTTGCCTAATTTTT-TCAAATTAATTTCTAATTAAATCGAAACAA
1 TTTCACGCTT-TAATATCGTTTTTCAT-ATTTTTCT-GAATTAATTTCTAATTAAATCGAAACAA
* * *** * *
3805 GATTGAGATGCTCGTAAAAAGAAATCCTTAAATTTTATTTGACTGAGATTTTG-TTAGATGAATA
63 GATTCAGATGCTCGTAAAAACAAATCCTTAAATCCAATGTGGCTGAGA-TTTGATTAGATGAATA
* * * *
3869 TAGATATTTCAAGGAGTCTTGGCA-CCAAAAATCATGCAAAACTGAGCCAGG-CCCTGAACGCCG
127 TAGATATTTCAAGGAGTCTCGG-AGCCAAAAATCATGCAAAACTGAGTCGGGCCCCGGAACG-CG
* * *
3932 -TTTTAGCCGAAAACCGTGATGGTTAGTACATGATTTCGGCTAAAATTTTGCAAAAATTGAGCAG
190 TTTTTAGCCAAAAACCGTGATGGTTAGTACACGATTTCGGCTAAAATTTTGCAAAAATTGACCAG
* * * * ** *
3996 AAAGATTTTTGCTCGATTTCTAGCAAAAATACTCATAAAAAATATATAATTCAACATTTAAAGGA
255 AAAGATTTTTCCTCAATTTTTAGCTAAAATACTCATAAAAAATATATAATTCAACATCAAAAAGA
* *
4061 TTGGAGGAAT
320 TTGAAGGACT
* *
4071 TTTCCCGCTTTAATATCGTTTTTCATATTTTTCTGAATTATTTTCTAATTAAATCGAAACAAGAT
1 TTTCACGCTTTAATATCGTTTTTCATATTTTTCTGAATTAATTTCTAATTAAATCGAAACAAGAT
* * * * * * *
4136 TCAGATGCACATAACAACAAATCCTTAAATCCAAGGTGCCT-ATGATTTAATTAGATGAATAAAG
66 TCAGATGCTCGTAAAAACAAATCCTTAAATCCAATGTGGCTGA-GATTTGATTAGATGAATATAG
* * * *
4200 ATATTTCAAGGAGTCTCGGAGCCGAAAATCATGCAAAACAGAGTCGTGGCCCTGGAATGCGTTTT
130 ATATTTCAAGGAGTCTCGGAGCCAAAAATCATGCAAAACTGAGTCG-GGCCCCGGAACGCGTTTT
*
4265 TAGCCAAAAAACCGTGATGGTTAGTACACGATTTCGGCTAACATTTTGCAAAAATTGATCC-GAA
194 TAGCC-AAAAACCGTGATGGTTAGTACACGATTTCGGCTAAAATTTTGCAAAAATTGA-CCAGAA
* * * * * *
4329 AGATATTTCCTCAATTTTTGGCTAAAATACTTATAAAAAGTATACAATTCCGACATCAAAAAGAT
257 AGATTTTTCCTCAATTTTTAGCTAAAATACTCATAAAAAATATATAATT-CAACATCAAAAAGAT
*
4394 TGAAGGGCT
321 TGAAGGACT
* * * * * *
4403 TTTAACGCTTCTAATATTGTTTTGCCTATTTTTTTCAAATTAATTTCTAATTAAATCGAAACAAG
1 TTTCACGCTT-TAATATCGTTTTTCATATTTTTCT-GAATTAATTTCTAATTAAATCGAAACAAG
* ** * *
4468 ATTGAGATGCTCGTAAAAACAAATCCTTAAATTTAATGTGGCTGAGATTTGGTTTGATGAATATA
64 ATTCAGATGCTCGTAAAAACAAATCCTTAAATCCAATGTGGCTGAGATTTGATTAGATGAATATA
* * * *
4533 GATATTTCAAGGAGTCT-TGACACCAAAAATCAAGCAAAACTGAGTCGGG-CCCTGAACGCCG-T
129 GATATTTCAAGGAGTCTCGGA-GCCAAAAATCATGCAAAACTGAGTCGGGCCCCGGAACG-CGTT
* * *
4595 TTTAGCCGAAAACCATGAT-G---GTACAGGATTTCGGCTAAAATTTTGCAAAAATTGACTC-GA
192 TTTAGCCAAAAACCGTGATGGTTAGTACACGATTTCGGCTAAAATTTTGCAAAAATTGAC-CAGA
* * * * * * * * *
4655 GAGATTTTTCCTCGATTTCTAGCGAAAATACTCAT-AAAAATAGAAAATTTAACGTCAAAAGGAT
256 AAGATTTTTCCTCAATTTTTAGCTAAAATACTCATAAAAAATATATAATTCAACATCAAAAAGAT
*
4719 TGGAGGACT
321 TGAAGGACT
* *
4728 TTTCACGCTTAAATATAGTTTTTCATATTTTTCTGAATTAATTTCTAATTAAATCG-AACAAGAT
1 TTTCACGCTTTAATATCGTTTTTCATATTTTTCTGAATTAATTTCTAATTAAATCGAAACAAGAT
* * * * * * * *
4792 TCAGATCCACATAAAAACAAATCCTTAAATCTAATGTGCCTAAGATTTGATTAGATGTATAAAGA
66 TCAGATGCTCGTAAAAACAAATCCTTAAATCCAATGTGGCTGAGATTTGATTAGATGAATATAGA
* * * * *
4857 TATTTCAAAGAGTCTCGGTGCCAAAAATCATGCAAAACAGAGCCGAGGCCCTGGAACGCGTTTTT
131 TATTTCAAGGAGTCTCGGAGCCAAAAATCATGCAAAACTGAGTCG-GGCCCCGGAACGCG-TTTT
* * * * * *
4922 TAGGC-AAAACCGTGATGGTTAGTACACAATTTCGTCTAATATTTTGTAAAAATTGACCCGAAAG
194 TAGCCAAAAACCGTGATGGTTAGTACACGATTTCGGCTAAAATTTTGCAAAAATTGACCAGAAAG
* * * * * *
4986 ATATGTCCTCAATTTTTGGCTAAAATACCCATAAAAAATATTTAATTCGACATCAAAAAAGATTG
259 ATTTTTCCTCAATTTTTAGCTAAAATACTCATAAAAAATATATAATTCAACATC-AAAAAGATTG
*
5051 AAGGGCT
323 AAGGACT
* * * * * * *
5058 TTTAACGCTTCTAATATTGTTTTTCTTATTTTTTTCAAATTAATTTTTAATTAAATCGATACAAG
1 TTTCACGCTT-TAATATCGTTTTTCATATTTTTCT-GAATTAATTTCTAATTAAATCGAAACAAG
* ** * * *
5123 ATTGAGATGCTCGTAAAAACAAATCCTTAAATTTAATTTGGTTGAGATTTGGTTAGATGAATATA
64 ATTCAGATGCTCGTAAAAACAAATCCTTAAATCCAATGTGGCTGAGATTTGATTAGATGAATATA
* ** * * *** *
5188 GATATTTCAAGGAGTCTTGGCCCCAAAAATCATGCAAATCTGAGGCAAACCCCGGAACGCGGTTT
129 GATATTTCAAGGAGTCTCGGAGCCAAAAATCATGCAAAACTGAGTCGGGCCCCGGAACGCGTTTT
* * * * **
5253 TAGCCGAAAACCGTAATGGTTAAGTAAATGATTTCGGCTAAAATTTTGCAAAAATTGACTTGAAA
194 TAGCCAAAAACCGTGATGGTT-AGTACACGATTTCGGCTAAAATTTTGCAAAAATTGACCAGAAA
** * * * * * *
5318 GATTTTTCCTGGATTTCTAGCGAAACTACTCATAAAAATATATATAATTCAAAACCAAAAAAAAT
258 GATTTTTCCTCAATTTTTAGCTAAAATACTCATAAAAA-ATATATAATTCAACATC-AAAAAGAT
* *
5383 TGAAAGCCTT
321 TGAAGGAC-T
* * * *
5393 TTTCACGCTTTTAATATAGTTTTGCCTATTTTTATGAATTAATTTCTAATTAAATCGAAACAAGA
1 TTTCACGC-TTTAATATCGTTTTTCATATTTTTCTGAATTAATTTCTAATTAAATCGAAACAAGA
* * * * * * * *
5458 TTGAGATGCTCGTTAAAACAAATCATTAAATTCAATGTGACTAATATTTGATTATATGAATATAG
65 TTCAGATGCTCGTAAAAACAAATCCTTAAATCCAATGTGGCTGAGATTTGATTAGATGAATATAG
* * * *
5523 ATATTTCAAGGAGTCTTGGCA-CCAAAAATCATGCAAAATTGAGTCGGGCCCCAGAATGCGTTTT
130 ATATTTCAAGGAGTCTCGG-AGCCAAAAATCATGCAAAACTGAGTCGGGCCCCGGAACGCGTTTT
* *
5587 TAGCCGAAAACCGTGATGG--A-TACA--ATTTCGGCTAAAATTTTGCAAAAATTGACCCGAAAG
194 TAGCCAAAAACCGTGATGGTTAGTACACGATTTCGGCTAAAATTTTGCAAAAATTGACCAGAAAG
** * * * *** * ******
5647 ATTTTTCCATCAATTTTTAATTAAAACACTCATAATATATATATATATGTGTGTCTGTGTGTGTG
259 ATTTTTCC-TCAATTTTTAGCTAAAATACTCATAAAAAATATATA-AT-T-CAAC-ATCAAAAAG
* ** *
5712 TGTGTGTGTGTGATT
319 -AT-TG-AAG-GACT
*** * * * * * *
5727 TAATGTCAAAAATATTGGAGGACATTTTACGCTTTTAATATCATTTT-TCATATT-TTTTAGAAT
1 T--T-TC-ACGCT-TT-----A-A-TAT-CGTTTTTCATAT--TTTTCTGA-ATTAATTT----C
* * * * * *
5790 TAATTTCTAGTTAAATCGAAATAAAATTCAGATGCTCGTAAAAACGAATTCTTCAATCCAATGTA
46 TA------A-TTAAATCGAAACAAGATTCAGATGCTCGTAAAAACAAATCCTTAAATCCAATGTG
* * * * ** * * * *
5855 GCTGATATTCGATTAAATGAATATTATTTATAAATCAAAGAGTCTTGGCGCCAAAAATCATTCAA
104 GCTGAGATTTGATTAGATGAATA-TA--GATATTTCAAGGAGTCTCGGAGCCAAAAATCATGCAA
* * ** * *
5920 AACCT-AGCCAGGGCCCCGGAACGCGTTTTTAGCAAAAAACTATGATGATTATTACACGATTTCG
166 AA-CTGAGTC-GGGCCCCGGAACGCGTTTTTAGCCAAAAACCGTGATGGTTAGTACACGATTTCG
* * * * * *
5984 GCTAGAATTTTACAAACATTGACTC-GAAAG-TTATTTCCTCAATTTTTATCCACAATACTCATA
229 GCTAAAATTTTGCAAAAATTGAC-CAGAAAGATT-TTTCCTCAATTTTTAGCTAAAATACTCATA
* ** *
6047 AAAATTATATAATTCAACGCCAAAAAGATTGAAGGATT
292 AAAAATATATAATTCAACATCAAAAAGATTGAAGGACT
* * * * * * *
6085 TTTTATGCTTCTAATATCTTTTTTCCTATTATTTTCCGAATTAATTTCTAATCAAATCGAAACAT
1 TTTCACGCTT-TAATATCGTTTTTCATA-T-TTTTCTGAATTAATTTCTAATTAAATCGAAACAA
* *** * * *
6150 GATTCAGATGCTTGT-TTTACAAATCCTTAAATCCAATGTGGCTGACATTTGCTTAGATGAATGT
63 GATTCAGATGCTCGTAAAAACAAATCCTTAAATCCAATGTGGCTGAGATTTGATTAGATGAATAT
* * * *
6214 AGATATTTCAAGGAGT-TTGG-GCGCATAAAATCATGCAACACTGAATCAGGGTCCCGGAACGCG
128 AGATATTTCAAGGAGTCTCGGAGC-CA-AAAATCATGCAAAACTGAGTC-GGGCCCCGGAACGCG
* * * * *
6277 TTTTTAGCCAAAAACCGTGATTTCGACTAACATACACGA-TTCGGCTGATATTTTGCAAAAATTG
190 TTTTTAGCCAAAAACCGTGA--T-G-GTTA-GTACACGATTTCGGCTAAAATTTTGCAAAAATTG
* * * ** *
6341 ACCA-TAA-ATATTTCCTCAATTTTT-GTCTAAAATACTCATAAGATGTATATAATTCAA-TTCC
250 ACCAGAAAGATTTTTCCTCAATTTTTAG-CTAAAATACTCATAAAAAATATATAATTCAACAT-C
* *
6402 AAAAAAATTGGAGGACT
313 AAAAAGATTGAAGGACT
* *
6419 TTTCTCACTTTAAATATCGTTTTTCATATTTTTCTGAATTAATTTCTAATTAAATCGAAACAAGA
1 TTTCACGCTTT-AATATCGTTTTTCATATTTTTCTGAATTAATTTCTAATTAAATCGAAACAAGA
* * * * *
6484 TTCAAATACTCGTAAAAAACAAATCCTGAAATGCAATGTGGCTGAGATTT-A--ATAT-AA-ATA
65 TTCAGATGCTCGT-AAAAACAAATCCTTAAATCCAATGTGGCTGAGATTTGATTAGATGAATATA
* * * * *
6544 TATATTTCGAGGAGTCTC-GACGCAAAAAATCATGCAAAACTGAGTCAGGGCCCCGAAACACGTT
129 GATATTTCAAGGAGTCTCGGA-GCCAAAAATCATGCAAAACTGAGTC-GGGCCCCGGAACGCGTT
* * *
6608 TTTAG-CAAAACACCGTGATAGTTAGTACACGATGTCGGCTAAAATTTTGCAAAAAATGACCAGA
192 TTTAGCCAAAA-ACCGTGATGGTTAGTACACGATTTCGGCTAAAATTTTGCAAAAATTGACCAGA
* * * * * ***
6672 AA-AATATTCTATCAATTTTTAGCCACAATACTCATAAAAAATATATAATTCAATGCCAAAAA-A
256 AAGATTTTTC-CTCAATTTTTAGCTAAAATACTCATAAAAAATATATAATTCAACATCAAAAAGA
*
6735 TTTGAAAGG-TT
320 -TTG-AAGGACT
* * * * *
6746 TTTCATGCTTCTAATATCGTTCTTTCTATTTTATTTCCGAACTAATTTCTAATTAAAACGAAACA
1 TTTCACGCTT-TAATATCGTT-TTTC-ATATT-TTTCTGAATTAATTTCTAATTAAATCGAAACA
* * * * * *
6811 TGATTCAGATGTTTGT-------AA-----AAA--CAA--TGGTTGGGATTTGGTTAGATGAATA
62 AGATTCAGATGCTCGTAAAAACAAATCCTTAAATCCAATGTGGCTGAGATTTGATTAGATGAATA
* * * * * ** * * * *
6860 TAGATATTTCAAGGAGTCTCAGTGCCAAACATCATTCAAAATTGAACCAGGCCTCAGAATGC-TT
127 TAGATATTTCAAGGAGTCTCGGAGCCAAAAATCATGCAAAACTGAGTCGGGCCCCGGAACGCGTT
* * * * *
6924 TCTTAGCCAAAAACCGTTATGATTATTACACGATTTCAGCTAAAATTTTGCAAAAATTGACCCGA
192 T-TTAGCCAAAAACCGTGATGGTTAGTACACGATTTCGGCTAAAATTTTGCAAAAATTGACCAGA
* * * * **
6989 AAGATATCTCCTCAATTTTTAG-TCATAATATTCATAAAAAAATATATAA-TCAACGCCAAAAAG
256 AAGATTTTTCCTCAATTTTTAGCT-AAAATACTCAT-AAAAAATATATAATTCAACATCAAAAAG
*
7052 ATTGAAGGGCT
319 ATTGAAGGACT
* * *
7063 TTTCACGCTTTTAATATCGTTTTTCATATTTTTTCTGAACTAAATTCTAATTAAATAGAAACAAG
1 TTTCACGC-TTTAATATCGTTTTTCATA-TTTTTCTGAATTAATTTCTAATTAAATCGAAACAAG
* * * * *
7128 ATTTAGATGCTCGTAAAAACAAATCCTTAAATGCAATGTAGCTAAGATTTTATTAGATGAATATA
64 ATTCAGATGCTCGTAAAAACAAATCCTTAAATCCAATGTGGCTGAGATTTGATTAGATGAATATA
* * * * * * * *
7193 GATATTTCAAGGAGTGTCGGTGCCAAAAACCATGCAAAAC-AAATCCGGGGCTCCGAAACGCATT
129 GATATTTCAAGGAGTCTCGGAGCCAAAAATCATGCAAAACTGAGT-C-GGGCCCCGGAACGCGTT
* * * * *
7257 TTTAGCCAAAAACC------G-T-GTCCACGATTTTGGCTAAAACTTTGCAAAAAATGACCCGAA
192 TTTAGCCAAAAACCGTGATGGTTAGTACACGATTTCGGCTAAAATTTTGCAAAAATTGACCAGAA
* * * * * ** * *
7314 A-AATTTTCCCCTATTTCTAGATAAAAATA-TCATAAACTATATATAATTTAAC-GCTAAAAAGA
257 AGATTTTTCCTCAATTTTTAGCT-AAAATACTCATAAAAAATATATAATTCAACATC-AAAAAGA
*
7376 TTGGAGGACT
320 TTGAAGGACT
* * *
7386 TTTCACGCTTTTAATATCATTTTTCATATTTATCTAAATTAATTTCTAATTAAATCGAAACAAGA
1 TTTCACGC-TTTAATATCGTTTTTCATATTTTTCTGAATTAATTTCTAATTAAATCGAAACAAGA
* * * * * * * * *
7451 TTTATATGCTTGTAAAAACAACTTCTTAAATCCTATGTGGCTGAGATTTAATTAGATGAATGTGG
65 TTCAGATGCTCGTAAAAACAAATCCTTAAATCCAATGTGGCTGAGATTTGATTAGATGAATATAG
* * * * * * *
7516 ATATCTCAAGGAGTCTTGGCA-TCAAAAATCATGCAAAACTGAGGCGGGGCCCCAGAATGCTTTT
130 ATATTTCAAGGAGTCTCGG-AGCCAAAAATCATGCAAAACTGAGTC-GGGCCCCGGAACGCGTTT
* * * * * **
7580 TTAGCCAAAAACTGTGATGGTTATTACACGGTTTAGGCTAAAATTTTGTAAAAATTGATTAGAAA
193 TTAGCCAAAAACCGTGATGGTTAGTACACGATTTCGGCTAAAATTTTGCAAAAATTGACCAGAAA
* * * * * ** *
7645 -ATATCTCCTCAATTTTTGGCTAAAATATTCATAAAAAATATATAATTCCACGCCAATAAGATTG
258 GATTTTTCCTCAATTTTTAGCTAAAATACTCATAAAAAATATATAATTCAACATCAAAAAGATTG
*
7709 AAGGGCT
323 AAGGACT
* * * **
7716 TTTGACGTTTCTAATATCGTTTTTCCTACTTTTTCCAAATTAATTTCTAATTAAATCGAAACAAG
1 TTTCACGCTT-TAATATCGTTTTTCATA-TTTTTCTGAATTAATTTCTAATTAAATCGAAACAAG
*
7781 ATTCAGATGCTCGTAAAAACAAATCCTTAAATCCAATCTGGCTGAGATTTGATTAGATGAATATA
64 ATTCAGATGCTCGTAAAAACAAATCCTTAAATCCAATGTGGCTGAGATTTGATTAGATGAATATA
* * * *
7846 GATATTTCAAGTAGTCTCGGAGCCAAAAATCATACAAAATTGAGTCGGGTCGCCGGAACGCGTTT
129 GATATTTCAAGGAGTCTCGGAGCCAAAAATCATGCAAAACTGAGTCGGG-CCCCGGAACGCGTTT
* * *
7911 TTAGCCAAAAACCGTGATGGTTAGTACACGATTTTGGCTAAAACTTTGCAAAAAAAAATGACTCA
193 TTAGCCAAAAACCGTGATGGTTAGTACACGATTTCGGCTAAAATTTTGC---AAAAATTGAC-CA
* * * * * * * * *
7976 AAAAG-TTTTTCCCCTATTTCTGTA--TAAAATACTCCTAAAATATGTATAATTTAAC-GCTAAA
254 GAAAGATTTTTCCTCAATTT-T-TAGCTAAAATACTCATAAAAAATATATAATTCAACATCAAAA
*
8037 AGATTGGAGGACT
317 AGATTGAAGGACT
* *
8050 TTTCACGCTTTTAATATCGTTTTTCATATTTTTCTGATTTAATTTGTAATTAAATC-AAA-AAGA
1 TTTCACGC-TTTAATATCGTTTTTCATATTTTTCTGAATTAATTTCTAATTAAATCGAAACAAGA
* * ** * *
8113 TTCAGATGCTTGTAATAACAAATTTTTAAGTCCAATGTGGCTGAGATTTGATTAGATGAATATGG
65 TTCAGATGCTCGTAAAAACAAATCCTTAAATCCAATGTGGCTGAGATTTGATTAGATGAATATAG
* * * * * * *
8178 ATATCTCAAGGATTCTTGGTGTCAAAAATCATGCAAAACTGAGCCGAGGCCCCAGAACGC-TTTT
130 ATATTTCAAGGAGTCTCGGAGCCAAAAATCATGCAAAACTGAGTCG-GGCCCCGGAACGCGTTTT
* ** * * * ***
8242 TAGCAAAAAAACTATGATGGTTATTACACGATTTCGGCTAAAATTTTGTAAAATTTGTTTAGAAA
194 TAGC-CAAAAACCGTGATGGTTAGTACACGATTTCGGCTAAAATTTTGCAAAAATTGACCAGAAA
* * *
8307 AATATTTCCTCAATTTTTAGCT-AAA-A--CATAAAAAATATATAATTCAACACCAAAAAGATTG
258 GATTTTTCCTCAATTTTTAGCTAAAATACTCATAAAAAATATATAATTCAACATCAAAAAGATTG
*
8368 AAGGGCT
323 AAGGACT
* * * ** *
8375 TTTGACGTTTTCAATATCGTTTTTCCTATTTTTTCCAAATTAATTTCTAATTAAATCAAAACAAG
1 TTTCACGCTTT-AATATCGTTTTTCATA-TTTTTCTGAATTAATTTCTAATTAAATCGAAACAAG
*
8440 ATTCAGATGCTCGTAAAAACAAATCCTTAAATCCAATGTGGCTGAGATTTGATTAGATTAATATA
64 ATTCAGATGCTCGTAAAAACAAATCCTTAAATCCAATGTGGCTGAGATTTGATTAGATGAATATA
* * * *
8505 GATATTTCAAGTAGTCTCGGAGCCAAAAATCATACAAAATTGAG-CTGGGTCGCCGGAACGCGTT
129 GATATTTCAAGGAGTCTCGGAGCCAAAAATCATGCAAAACTGAGTC-GGG-CCCCGGAACGCGTT
* *
8569 TTTAGCCAAAAAACTGTGATGGTTTGTTAGTCCACGATTTCGGCTAAAATTTTGCAAAAATTGAC
192 TTTAGCC-AAAAACCGTGAT-G---GTTAGTACACGATTTCGGCTAAAATTTTGCAAAAATTGAC
* * * * * * ***
8634 ACA-AAATAATTCTCGTCGATTTTTGGCTAAAATACTCAT-AAAAATATATAATTCAATGCCAAA
252 -CAGAAAGATTTTTCCTCAATTTTTAGCTAAAATACTCATAAAAAATATATAATTCAACATCAAA
* * *
8697 AATATTGGAGGGCT
316 AAGATTGAAGGACT
* *
8711 TTTTACGCTTTTAATATCGTATTTC
1 TTTCACGC-TTTAATATCGTTTTTC
8736 TTTCTAATTA
Statistics
Matches: 3978, Mismatches: 803, Indels: 423
0.76 0.15 0.08
Matches are distributed among these distances:
313 10 0.00
315 45 0.01
316 16 0.00
317 117 0.03
318 62 0.02
319 1 0.00
322 259 0.07
323 90 0.02
324 106 0.03
325 99 0.02
326 46 0.01
327 149 0.04
328 368 0.09
329 153 0.04
330 224 0.06
331 639 0.16
332 230 0.06
333 390 0.10
334 458 0.12
335 113 0.03
336 104 0.03
337 18 0.00
338 3 0.00
343 3 0.00
344 1 0.00
345 2 0.00
346 22 0.01
347 12 0.00
348 8 0.00
349 1 0.00
351 2 0.00
353 1 0.00
354 3 0.00
355 1 0.00
356 1 0.00
357 1 0.00
358 69 0.02
359 3 0.00
360 2 0.00
361 36 0.01
362 34 0.01
363 1 0.00
364 2 0.00
365 6 0.00
366 30 0.01
367 36 0.01
368 1 0.00
ACGTcount: A:0.36, C:0.16, G:0.15, T:0.33
Consensus pattern (329 bp):
TTTCACGCTTTAATATCGTTTTTCATATTTTTCTGAATTAATTTCTAATTAAATCGAAACAAGAT
TCAGATGCTCGTAAAAACAAATCCTTAAATCCAATGTGGCTGAGATTTGATTAGATGAATATAGA
TATTTCAAGGAGTCTCGGAGCCAAAAATCATGCAAAACTGAGTCGGGCCCCGGAACGCGTTTTTA
GCCAAAAACCGTGATGGTTAGTACACGATTTCGGCTAAAATTTTGCAAAAATTGACCAGAAAGAT
TTTTCCTCAATTTTTAGCTAAAATACTCATAAAAAATATATAATTCAACATCAAAAAGATTGAAG
GACT
Found at i:4344 original size:933 final size:930
Alignment explanation
Indices: 2480--4345 Score: 2977
Period size: 933 Copynumber: 2.0 Consensus size: 930
2470 TTGGAGGACT
2480 TTTCACGCTTTAATATCGTTTTCATATTTTTCTGAATTAATTTCTAATTAAATCGAACAAGATTC
1 TTTCACGCTTTAATATCGTTTTCATATTTTTCTGAATTAATTTCTAATTAAATCGAACAAGATTC
* *
2545 AGATTCACATAAAAACAAATCCTTAAATCTAATTTGCCTGAGATTTGATTAGATGAATAAAGATG
66 AGATTCACATAAAAACAAATCCTTAAATCTAATGTGCCTGAGATTTGATTAGATGAATAAAGATA
*
2610 TTTCAAGGAGTCTCGGCGCAAAAAATCATGCAAAACATAGCCGTGACTCTGGAATGCGTTTTTAG
131 TTTCAAGGAGTCTCGGCGCAAAAAATCATGCAAAACAGAGCCGTGACTCTGGAATGCGTTTTTAG
** * * *
2675 CCAAAAACCGTGACGGTTAGTACACGATTTCAGCTAATGTTTTGTAAATATTGATTCGAAAGATA
196 CCAAAAACCGTGACGGTTAGTACACGATTTCAGCTAACATTTTGCAAAAATTGATACGAAAGATA
* * *
2740 TTTCCTCAATTTTTGGCTAAAATACTCATAAAAAATATAGAATTCCTAAATCAAAAAGATTGAAG
261 TTTCCTCAATTTTTGCCCAAAATACTCAGAAAAAATATAGAATTCCTAAATCAAAAAGATTGAAG
*
2805 GGCTTTTAACGCTTCTAATATTGTTTTGCCTATTTTTTCAAATTATTTTCTAATTAAATCGAAAC
326 GGCTTTTAACGCTTCTAATATTGTTTTGCCTATTTTTTCAAATTAATTTCTAATTAAATCGAAAC
* * * *
2870 AAGATTCAGATGCTCGTTAAAACAAATCCTGAATTTGATGTGGCTGATATTTGGTTAGATGAATA
391 AAGATTCAGATGCTCGTAAAAACAAATCCTAAATTTGATGTGACTGAGATTTGGTTAGATGAATA
* *
2935 TAGATATTTCAAGGAGTCTTGGCACCAAAAATCAAGCAAAACTGAGTCGGGCCCTGAACGCCGTT
456 TAGATATTTCAAGGAGTCTTGGCACCAAAAATCAAGCAAAACTGAGCCAGGCCCTGAACGCCGTT
* *
3000 TCAGCCGAAAACCGTGATGCATTAGTACATGATTTCGGCTAAAATTTTGTAAAAATTGACCCGAA
521 TCAGCCGAAAACCGTGATGCATTAGTACATGATTTCGGCTAAAATTTTGCAAAAATTGACCAGAA
* * *
3065 AGATTTTTCCTCGATTTTTAGCGAAAAAACTCATAAAAAATAGAAAATTCAACGTCAAAATGATT
586 AGATTTTTCCTCGATTTCTAGCGAAAAAACTCATAAAAAATAGAAAATTCAACATCAAAAGGATT
*
3130 GGAGGACTTTTCACGCTTTAATATCGTTTTTCATATTTTTCTGAATTAGTTCTTAATTAAATCGA
651 GGAGGAATTTTCACGCTTTAATATCGTTTTTCATATTTTTCTGAATTAGTTCTTAATTAAATCGA
* * * *
3195 AACAAGATTCAGATCCACATAAAAACAAATCCTTAACTCTAATCTGCCTGAGATTTGATTAGATG
716 AACAAGATTCAGATCCACATAAAAACAAATCCTTAAATCCAAGCTGCCTGAGATTTAATTAGATG
* *
3260 TATAAAGATATTTCAAGGAGTCTCGGTGCCAAAAATCATGCAAAACAGAGCCGTGACCCAGGAAC
781 AATAAAGATATTTCAAGGAGTCTCGGAGCCAAAAATCATGCAAAACAGAGCCGTGACCCAGGAAC
*
3325 ACGTTTTTTAGGCAAAAACCGCGATGGTTAGTACACGATTTCGGCTAAAATTTTGCAAAAATTGA
846 ACGTTTTTTAGCCAAAAACCGCGATGGTTAGTACACGATTTCGGCTAAAATTTTGCAAAAATTGA
*
3390 CCCGAAAGATATTTGCTCAA
911 CCCGAAAGATATTTCCTCAA
* *
3410 TTTCACGCTTTAGTATCGTTTTTCATATTTTTCTGAATTAATTTCTAATTAAATTGAAACAAGAT
1 TTTCACGCTTTAATATCG-TTTTCATATTTTTCTGAATTAATTTCTAATTAAATCG-AACAAGAT
3475 TCAGATTCACATAAAAACAAATCCTTAAATCTAATGTGCCTGAGATTTGATTAGATGAATAAAGA
64 TCAGATTCACATAAAAACAAATCCTTAAATCTAATGTGCCTGAGATTTGATTAGATGAATAAAGA
* * * **
3540 TATTTCAAGGAGTCTCGGGGCAAAAAATTATGCAAAAGAGAGTTGTGACTCTGGAATGCGTTTTT
129 TATTTCAAGGAGTCTCGGCGCAAAAAATCATGCAAAACAGAGCCGTGACTCTGGAATGCGTTTTT
* *
3605 AGCCAAAAACCGTGATGGTTAGTACACGATTTCGGCTAACATTTTGCAAAAATTGATACGAAAGA
194 AGCCAAAAACCGTGACGGTTAGTACACGATTTCAGCTAACATTTTGCAAAAATTGATACGAAAGA
* *
3670 TATTTCCTCCATTTTTGCCCAAAATACTCAGAAAAAATATAGAATTCCTAAATCAGAAAGATTGA
259 TATTTCCTCAATTTTTGCCCAAAATACTCAGAAAAAATATAGAATTCCTAAATCAAAAAGATTGA
*
3735 AGGGTTTTTAACGCTTCTAATATTGTTTTGCCTAATTTTTTCAAATTAATTTCTAATTAAATCGA
324 AGGGCTTTTAACGCTTCTAATATTGTTTTGCCT-ATTTTTTCAAATTAATTTCTAATTAAATCGA
* * * * *
3800 AACAAGATTGAGATGCTCGTAAAAAGAAATCCTTAAATTTTATTTGACTGAGATTTTGTTAGATG
388 AACAAGATTCAGATGCTCGTAAAAACAAATCC-TAAATTTGATGTGACTGAGATTTGGTTAGATG
*
3865 AATATAGATATTTCAAGGAGTCTTGGCACCAAAAATCATGCAAAACTGAGCCAGGCCCTGAACGC
452 AATATAGATATTTCAAGGAGTCTTGGCACCAAAAATCAAGCAAAACTGAGCCAGGCCCTGAACGC
* * *
3930 CGTTTTAGCCGAAAACCGTGATG-GTTAGTACATGATTTCGGCTAAAATTTTGCAAAAATTGAGC
517 CGTTTCAGCCGAAAACCGTGATGCATTAGTACATGATTTCGGCTAAAATTTTGCAAAAATTGACC
* * * **
3994 AGAAAGATTTTTGCTCGATTTCTAGC-AAAAATACTCATAAAAAATATATAATTCAACATTTAAA
582 AGAAAGATTTTTCCTCGATTTCTAGCGAAAAA-ACTCATAAAAAATAGAAAATTCAACATCAAAA
* *
4058 GGATTGGAGGAATTTTCCCGCTTTAATATCGTTTTTCATATTTTTCTGAATTA-TTTTCTAATTA
646 GGATTGGAGGAATTTTCACGCTTTAATATCGTTTTTCATATTTTTCTGAATTAGTTCT-TAATTA
* * *
4122 AATCGAAACAAGATTCAGATGCACATAACAACAAATCCTTAAATCCAAGGTGCCT-ATGATTTAA
710 AATCGAAACAAGATTCAGATCCACATAAAAACAAATCCTTAAATCCAAGCTGCCTGA-GATTTAA
* * *
4186 TTAGATGAATAAAGATATTTCAAGGAGTCTCGGAGCCGAAAATCATGCAAAACAGAGTCGTGGCC
774 TTAGATGAATAAAGATATTTCAAGGAGTCTCGGAGCCAAAAATCATGCAAAACAGAGCCGTGACC
* ** * *
4251 CTGGAATGCG-TTTTTAGCCAAAAAACCGTGATGGTTAGTACACGATTTCGGCTAACATTTTGCA
839 CAGGAACACGTTTTTTAGCC-AAAAACCGCGATGGTTAGTACACGATTTCGGCTAAAATTTTGCA
*
4315 AAAATTGATCCGAAAGATATTTCCTCAA
903 AAAATTGACCCGAAAGATATTTCCTCAA
4343 TTT
1 TTT
4346 TTGGCTAAAA
Statistics
Matches: 856, Mismatches: 72, Indels: 13
0.91 0.08 0.01
Matches are distributed among these distances:
930 17 0.02
931 36 0.04
932 297 0.35
933 396 0.46
934 110 0.13
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (930 bp):
TTTCACGCTTTAATATCGTTTTCATATTTTTCTGAATTAATTTCTAATTAAATCGAACAAGATTC
AGATTCACATAAAAACAAATCCTTAAATCTAATGTGCCTGAGATTTGATTAGATGAATAAAGATA
TTTCAAGGAGTCTCGGCGCAAAAAATCATGCAAAACAGAGCCGTGACTCTGGAATGCGTTTTTAG
CCAAAAACCGTGACGGTTAGTACACGATTTCAGCTAACATTTTGCAAAAATTGATACGAAAGATA
TTTCCTCAATTTTTGCCCAAAATACTCAGAAAAAATATAGAATTCCTAAATCAAAAAGATTGAAG
GGCTTTTAACGCTTCTAATATTGTTTTGCCTATTTTTTCAAATTAATTTCTAATTAAATCGAAAC
AAGATTCAGATGCTCGTAAAAACAAATCCTAAATTTGATGTGACTGAGATTTGGTTAGATGAATA
TAGATATTTCAAGGAGTCTTGGCACCAAAAATCAAGCAAAACTGAGCCAGGCCCTGAACGCCGTT
TCAGCCGAAAACCGTGATGCATTAGTACATGATTTCGGCTAAAATTTTGCAAAAATTGACCAGAA
AGATTTTTCCTCGATTTCTAGCGAAAAAACTCATAAAAAATAGAAAATTCAACATCAAAAGGATT
GGAGGAATTTTCACGCTTTAATATCGTTTTTCATATTTTTCTGAATTAGTTCTTAATTAAATCGA
AACAAGATTCAGATCCACATAAAAACAAATCCTTAAATCCAAGCTGCCTGAGATTTAATTAGATG
AATAAAGATATTTCAAGGAGTCTCGGAGCCAAAAATCATGCAAAACAGAGCCGTGACCCAGGAAC
ACGTTTTTTAGCCAAAAACCGCGATGGTTAGTACACGATTTCGGCTAAAATTTTGCAAAAATTGA
CCCGAAAGATATTTCCTCAA
Found at i:5699 original size:2 final size:2
Alignment explanation
Indices: 5694--5723 Score: 51
Period size: 2 Copynumber: 15.0 Consensus size: 2
5684 TATATATATA
*
5694 TG TG TG TC TG TG TG TG TG TG TG TG TG TG TG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
5724 ATTTAATGTC
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.00, C:0.03, G:0.47, T:0.50
Consensus pattern (2 bp):
TG
Found at i:9431 original size:45 final size:45
Alignment explanation
Indices: 9380--9506 Score: 236
Period size: 45 Copynumber: 2.8 Consensus size: 45
9370 AATGCTACTT
9380 CATCTCTAGGTAATTCATCAAAATAAAGCTAATATTATACTCCTC
1 CATCTCTAGGTAATTCATCAAAATAAAGCTAATATTATACTCCTC
*
9425 CATCTCTAGGTAATTCATCAAAATAAAGCTAATATTCTACTCCTC
1 CATCTCTAGGTAATTCATCAAAATAAAGCTAATATTATACTCCTC
*
9470 CATCTCTAGGTAATTCATCAAAATAAACCTAATATTA
1 CATCTCTAGGTAATTCATCAAAATAAAGCTAATATTA
9507 ATTTTTGCTT
Statistics
Matches: 79, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
45 79 1.00
ACGTcount: A:0.39, C:0.22, G:0.06, T:0.33
Consensus pattern (45 bp):
CATCTCTAGGTAATTCATCAAAATAAAGCTAATATTATACTCCTC
Found at i:10526 original size:22 final size:22
Alignment explanation
Indices: 10479--10526 Score: 60
Period size: 22 Copynumber: 2.2 Consensus size: 22
10469 TATCCTACCC
* **
10479 ATTATTTTTGTAACCAGGTCCC
1 ATTATTTTTGTAACCAAGTCAA
*
10501 ATTATTTTTGTAACCAAGTGAA
1 ATTATTTTTGTAACCAAGTCAA
10523 ATTA
1 ATTA
10527 CTAACAACTC
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.31, C:0.15, G:0.12, T:0.42
Consensus pattern (22 bp):
ATTATTTTTGTAACCAAGTCAA
Found at i:11429 original size:31 final size:31
Alignment explanation
Indices: 11386--11448 Score: 117
Period size: 31 Copynumber: 2.0 Consensus size: 31
11376 GCGTGTGCGC
11386 TGCAATCATCTTCTTATTAGGGTTATATTTT
1 TGCAATCATCTTCTTATTAGGGTTATATTTT
*
11417 TGCAGTCATCTTCTTATTAGGGTTATATTTT
1 TGCAATCATCTTCTTATTAGGGTTATATTTT
11448 T
1 T
11449 TGTAGTTGTT
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.21, C:0.13, G:0.14, T:0.52
Consensus pattern (31 bp):
TGCAATCATCTTCTTATTAGGGTTATATTTT
Found at i:11694 original size:45 final size:48
Alignment explanation
Indices: 11579--11709 Score: 205
Period size: 49 Copynumber: 2.8 Consensus size: 48
11569 AAATTCTATT
11579 CTATCTCTAGGTAATTCATCAAAATAAAGCTGATATTCTACTCCTCCA
1 CTATCTCTAGGTAATTCATCAAAATAAAGCTGATATTCTACTCCTCCA
*
11627 TCTATCTCTAGGTAATTCATCAAAATAAAGTTGATATTCTACTCCT-C-
1 -CTATCTCTAGGTAATTCATCAAAATAAAGCTGATATTCTACTCCTCCA
* *
11674 C-ATCTCTAGATAATTCATCAAAATAAAGCTAATATT
1 CTATCTCTAGGTAATTCATCAAAATAAAGCTGATATT
11710 AATTGTTGCT
Statistics
Matches: 78, Mismatches: 4, Indels: 4
0.91 0.05 0.05
Matches are distributed among these distances:
45 32 0.41
46 1 0.01
48 1 0.01
49 44 0.56
ACGTcount: A:0.36, C:0.21, G:0.08, T:0.35
Consensus pattern (48 bp):
CTATCTCTAGGTAATTCATCAAAATAAAGCTGATATTCTACTCCTCCA
Found at i:12348 original size:22 final size:23
Alignment explanation
Indices: 12317--12362 Score: 60
Period size: 22 Copynumber: 2.0 Consensus size: 23
12307 TAATATCCAC
12317 ACACAATTAAT-ATGAAAT-TAAA
1 ACACAATTAATCAT-AAATATAAA
*
12339 ACACACTTAATCATAAATATAAA
1 ACACAATTAATCATAAATATAAA
12362 A
1 A
12363 ATAGTAAATT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
22 14 0.67
23 7 0.33
ACGTcount: A:0.59, C:0.13, G:0.02, T:0.26
Consensus pattern (23 bp):
ACACAATTAATCATAAATATAAA
Found at i:12602 original size:31 final size:32
Alignment explanation
Indices: 12567--12647 Score: 101
Period size: 34 Copynumber: 2.4 Consensus size: 32
12557 ACAATTATAG
12567 TGGATTAATATCTTTCCATAATT-TAAAAAAT
1 TGGATTAATATCTTTCCATAATTATAAAAAAT
12598 TGGATTTACAATATCTTTCCATAATTAATAAAAAAT
1 TGGA-TT--AATATCTTTCCATAATT-ATAAAAAAT
*
12634 TGAATTAATCATCT
1 TGGATTAAT-ATCT
12648 AAAAAAATAA
Statistics
Matches: 43, Mismatches: 1, Indels: 9
0.81 0.02 0.17
Matches are distributed among these distances:
31 4 0.09
32 2 0.05
33 3 0.07
34 21 0.49
35 2 0.05
36 11 0.26
ACGTcount: A:0.42, C:0.11, G:0.06, T:0.41
Consensus pattern (32 bp):
TGGATTAATATCTTTCCATAATTATAAAAAAT
Found at i:12786 original size:5 final size:5
Alignment explanation
Indices: 12776--12809 Score: 54
Period size: 5 Copynumber: 7.2 Consensus size: 5
12766 TATATAGTAG
12776 TAAGA TAAGA TAAGA T-AG- TAAGA TAAGA TAAGA T
1 TAAGA TAAGA TAAGA TAAGA TAAGA TAAGA TAAGA T
12810 TTTGAGTTGA
Statistics
Matches: 27, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
3 1 0.04
4 4 0.15
5 22 0.81
ACGTcount: A:0.56, C:0.00, G:0.21, T:0.24
Consensus pattern (5 bp):
TAAGA
Found at i:12796 original size:18 final size:18
Alignment explanation
Indices: 12773--12809 Score: 74
Period size: 18 Copynumber: 2.1 Consensus size: 18
12763 TTTTATATAG
12773 TAGTAAGATAAGATAAGA
1 TAGTAAGATAAGATAAGA
12791 TAGTAAGATAAGATAAGA
1 TAGTAAGATAAGATAAGA
12809 T
1 T
12810 TTTGAGTTGA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.54, C:0.00, G:0.22, T:0.24
Consensus pattern (18 bp):
TAGTAAGATAAGATAAGA
Found at i:12799 original size:13 final size:13
Alignment explanation
Indices: 12781--12805 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
12771 AGTAGTAAGA
12781 TAAGATAAGATAG
1 TAAGATAAGATAG
12794 TAAGATAAGATA
1 TAAGATAAGATA
12806 AGATTTTGAG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.56, C:0.00, G:0.20, T:0.24
Consensus pattern (13 bp):
TAAGATAAGATAG
Found at i:13420 original size:2 final size:2
Alignment explanation
Indices: 13413--13457 Score: 81
Period size: 2 Copynumber: 22.5 Consensus size: 2
13403 CATAACCCAT
*
13413 TA TA TA TA TA TA TA CA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
13455 TA T
1 TA T
13458 TGATCATGAT
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
2 41 1.00
ACGTcount: A:0.49, C:0.02, G:0.00, T:0.49
Consensus pattern (2 bp):
TA
Found at i:18101 original size:2 final size:2
Alignment explanation
Indices: 18090--18127 Score: 53
Period size: 2 Copynumber: 20.0 Consensus size: 2
18080 AAATATGTAT
*
18090 TA TA -A TA TA TA TA TA TA TA TA TA AA TA TA T- TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
18128 GTAATACGGG
Statistics
Matches: 32, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
1 2 0.06
2 30 0.94
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (2 bp):
TA
Found at i:18399 original size:29 final size:31
Alignment explanation
Indices: 18334--18407 Score: 134
Period size: 31 Copynumber: 2.5 Consensus size: 31
18324 ATTAAGCTAC
18334 ACCCTCTACACTACCGGTACCAAAAAACAAA
1 ACCCTCTACACTACCGGTACCAAAAAACAAA
18365 ACCCTCTACACTACCGGTACC-AAAAA-AAA
1 ACCCTCTACACTACCGGTACCAAAAAACAAA
18394 ACCCTCTACACTAC
1 ACCCTCTACACTAC
18408 ATCCTCTATA
Statistics
Matches: 43, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
29 17 0.40
30 5 0.12
31 21 0.49
ACGTcount: A:0.42, C:0.38, G:0.05, T:0.15
Consensus pattern (31 bp):
ACCCTCTACACTACCGGTACCAAAAAACAAA
Found at i:20240 original size:275 final size:275
Alignment explanation
Indices: 19751--20280 Score: 672
Period size: 275 Copynumber: 1.9 Consensus size: 275
19741 TTTTAGCCAA
* * *
19751 AAAAAAACCATGATGGTACACAATTTCGGATAAAATTTTACAAAAATTGATCGGAAATATTTTTC
1 AAAAAAACCATGATGGTACACAATTTCGGATAAAATTTCACAAAAATTGACCGGAAAAATTTTTC
* * * * *
19816 TCAATTTTAGCCACAATACTCATAAAAAATATATAATTCAACACTAGAAATATTGAATGCCTTCT
66 TCAATTTTAGCCACAATACTCATAAAAAATATATAATTCAAAACCAGAAAGATTGAAGGACTTCT
* * ** * * * **
19881 CATGCTTCTAATATTGTTTTTCCTATTTCTTTTCAAATTAATTTCTAATTGAATTAAAACATGAT
131 CACGCTTCTAATATCGTTTTTCAAATTTCTTCTCAAATTAATTTCTAATTAAATCAAAACAACAT
* *
19946 TCAAATGCTCGTAAAAACAAATCCTTAAATCCAATGTGGCTAAGATTTGGTTAGATGAATCCCAA
196 TCAAATGCTCGTAAAAACAAATCCTTAAATCCAATGTGGCTAAGATTCGATTAGATGAATCCCAA
20011 AATGCATTTTTCTCC
261 AATGCATTTTTCTCC
* * * * * * *
20026 AAAAAAACCGTTATGGTACACGATTTCGGTTACAATTTCGCAAAAATTGACCTGAAAAATTTTTC
1 AAAAAAACCATGATGGTACACAATTTCGGATAAAATTTCACAAAAATTGACCGGAAAAATTTTT-
* *
20091 CTCAATTATTAGCCACAATACTCATAGAATATATATAATT-AAAAGCCA-AAAGGATTGAAGGAC
65 CTCAATT-TTAGCCACAATACTCATAAAAAATATATAATTCAAAA-CCAGAAA-GATTGAAGGAC
* * * *
20154 TTTTTACGCTTTTAATATCGTTTTTCAAATTT-TTCT-AAATTAATTTCTAATTAAATCGAAACA
127 TTCTCACGCTTCTAATATCGTTTTTCAAATTTCTTCTCAAATTAATTTCTAATTAAATCAAAACA
* * * *
20217 ACATTCAGATGCTCGTAAAAACAAATCCTTAAATTCAATGTGGTTGAGATTCGATTAGATGAAT
192 ACATTCAAATGCTCGTAAAAACAAATCCTTAAATCCAATGTGGCTAAGATTCGATTAGATGAAT
20281 ATAAATATTT
Statistics
Matches: 215, Mismatches: 36, Indels: 8
0.83 0.14 0.03
Matches are distributed among these distances:
275 134 0.62
276 16 0.07
277 65 0.30
ACGTcount: A:0.38, C:0.16, G:0.11, T:0.35
Consensus pattern (275 bp):
AAAAAAACCATGATGGTACACAATTTCGGATAAAATTTCACAAAAATTGACCGGAAAAATTTTTC
TCAATTTTAGCCACAATACTCATAAAAAATATATAATTCAAAACCAGAAAGATTGAAGGACTTCT
CACGCTTCTAATATCGTTTTTCAAATTTCTTCTCAAATTAATTTCTAATTAAATCAAAACAACAT
TCAAATGCTCGTAAAAACAAATCCTTAAATCCAATGTGGCTAAGATTCGATTAGATGAATCCCAA
AATGCATTTTTCTCC
Found at i:21439 original size:2 final size:2
Alignment explanation
Indices: 21432--21458 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
21422 TACTCATGAA
21432 AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT A
21459 ATTTAACGCC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:23571 original size:340 final size:328
Alignment explanation
Indices: 22518--23663 Score: 1012
Period size: 332 Copynumber: 3.4 Consensus size: 328
22508 AAAGATGCCA
** * *
22518 AAAAAGATTGGAGTACTTTTCACGATTTTAATATCGTTTTTCATATTTTTTCTAAATTAATTTCT
1 AAAAAGATTGGAGGGCTTTTCACGCTTTTAATATCG-TTTTCTTATTTTTTCTAAATTAATTTCT
** * *** * *
22583 AATTAAATCGAAACATGATTCATATGCTCGTTAAAAACAAA--AAAAGAATCCAATTTGGCTAAG
65 AATTAAATCGAAACAAAATTCAGATGCTCG-TAAAAACAAATTCTTA-AATCCAATGTGGCTGAG
* * * * * ** * * *
22646 ATTTTATTAGATGAATATA-ATTATTTCAAGGAGTGTCGGC-GTAAAAAATAATGCAAAACTGAG
128 ATTTGATTAGATGAATACAGA-TATCTCAAGCAGTCTCGGCAG-CCAAAATCAGGC-AAATTGAG
* * * * ** ** * * *
22709 TTG-GTGCC-CCGAAACTCGTTTTTAGCCCAAAACCGTGATGGTTAGTACACGATTTTGGCTAAA
190 TCGAG-GCCACAG-AACGCTTTTTTAGCAAAAAACTATGATGGCTAGTACACGATTTCGACTAAA
* ** *
22772 ATTTTGCAAAAAAA-TGACCAGAAAAAATTTTCCTCAATTTTCT-TATAAAATACTCCTAAAATA
253 ATTTT-CAAAAAAATTGACC-G-AAAGATTTTCCTCAATTTT-TGGCTAAAATACTCATAAAA-A
* * **
22835 TATATAATTTAACGTT
313 TATATAAATCAACGCC
* **
22851 AAAAAGATTGGAGGACTTTTCACGCTTTTAATATCGTTTT-TTATATTTTTCTTTATTAATTTCT
1 AAAAAGATTGGAGGGCTTTTCACGCTTTTAATATCGTTTTCTTAT-TTTTTCTAAATTAATTTCT
* * * * * * *
22915 AATTAAATCGAAACAAAATTTAGATACTTGTAAAAAGAAATTTTTAAACCCAATGTGGTTGAGAT
65 AATTAAATCGAAACAAAATTCAGATGCTCGTAAAAACAAATTCTTAAATCCAATGTGGCTGAGAT
* * * * *
22980 TTGATTAGATGAATATAGATATCTCAAGCAGTCTTGGCATCGAAAATCATGCAAATTGAGTCGAG
130 TTGATTAGATGAATACAGATATCTCAAGCAGTCTCGGCAGCCAAAATCAGGCAAATTGAGTCGAG
* * * * * *
23045 GCCACAGAACGCTTTTTTATCCAAAAACTATTATGGTTATTACGCGATTTC-AGCTAAAATTTT-
195 GCCACAGAACGCTTTTTTAGCAAAAAACTATGATGGCTAGTACACGATTTCGA-CTAAAATTTTC
** *
23108 GTAAAAATTGACCCGAAAGATATTTCCTCAATTTCTGGCTAAAATACTCATAAAAAAATATATAA
259 AAAAAAATTGA-CCGAAAGAT-TTTCCTCAATTTTTGGCTAAAATACTCAT--AAAAATATATAA
*
23173 CTCAACGCC
320 ATCAACGCC
* * * * *
23182 AAAAAGATTGAAGGGCTTTTGACG-TTTCTAATATCGTTTTTCCTATTTTTTCCAAATAAATTTC
1 AAAAAGATTGGAGGGCTTTTCACGCTTT-TAATATCG-TTTTCTTATTTTTTCTAAATTAATTTC
* * * * * * *
23246 TAACTAAATCGAAACAAAACTCAGATGCTCGTCAAGACAAATCCTTAAATCTAATGTGGGTGAGA
64 TAATTAAATCGAAACAAAATTCAGATGCTCGTAAAAACAAATTCTTAAATCCAATGTGGCTGAGA
* * *
23311 TTTGATTAGATGAATACAGATGTTTCAAGTAGTCTCGG-AGCCAGAAATCAGGCAAAATTGAGTC
129 TTTGATTAGATGAATACAGATATCTCAAGCAGTCTCGGCAGCCA-AAATCAGGC-AAATTGAGTC
*
23375 G-GGTCCAC-GAAACG-TGTTTTTAGCAAAAAAAACCCGTGATGATTTGCTAGTACACGATTTCG
192 GAGG-CCACAG-AACGCT-TTTTTAGC--AAAAAA--C-T-ATGA-TGGCTAGTACACGATTTCG
* *
23437 ACTAAAATTTTACAAAAAAATTGACACGAAAGATTTCTTCTCAATTTTTGGCTAATATACTCATA
247 ACTAAAATTTT-CAAAAAAATTGAC-CGAAAGATTT-TCCTCAATTTTTGGCTAAAATACTCATA
*
23502 AAAATATATAAATCAATGCC
309 AAAATATATAAATCAACGCC
* * *
23522 AAAAAGATTGGGGGGTTTTTTACGCTTTTAATATCGTATTTCTTATTTTTTCTAAATTAATTTCT
1 AAAAAGATTGGAGGGCTTTTCACGCTTTTAATATCGT-TTTCTTATTTTTTCTAAATTAATTTCT
* * *
23587 TATTAAATCGAAACAAGATTCAGATGCTCGTAAAAACAAATTCTTAAATCCAATGTTGCTGAGAT
65 AATTAAATCGAAACAAAATTCAGATGCTCGTAAAAACAAATTCTTAAATCCAATGTGGCTGAGAT
23652 TATG-TTAGATGA
130 T-TGATTAGATGA
23664 TGTAAAGTAT
Statistics
Matches: 663, Mismatches: 113, Indels: 67
0.79 0.13 0.08
Matches are distributed among these distances:
329 11 0.02
330 30 0.05
331 115 0.17
332 222 0.33
333 65 0.10
335 5 0.01
337 1 0.00
338 1 0.00
339 4 0.01
340 159 0.24
341 9 0.01
342 41 0.06
ACGTcount: A:0.37, C:0.14, G:0.14, T:0.34
Consensus pattern (328 bp):
AAAAAGATTGGAGGGCTTTTCACGCTTTTAATATCGTTTTCTTATTTTTTCTAAATTAATTTCTA
ATTAAATCGAAACAAAATTCAGATGCTCGTAAAAACAAATTCTTAAATCCAATGTGGCTGAGATT
TGATTAGATGAATACAGATATCTCAAGCAGTCTCGGCAGCCAAAATCAGGCAAATTGAGTCGAGG
CCACAGAACGCTTTTTTAGCAAAAAACTATGATGGCTAGTACACGATTTCGACTAAAATTTTCAA
AAAAATTGACCGAAAGATTTTCCTCAATTTTTGGCTAAAATACTCATAAAAATATATAAATCAAC
GCC
Found at i:24039 original size:15 final size:16
Alignment explanation
Indices: 24021--24050 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
24011 ATAAATAATA
24021 ATATTATAAT-TAAAT
1 ATATTATAATCTAAAT
24036 ATATTATAATCTAAA
1 ATATTATAATCTAAA
24051 AAAAATTATT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 10 0.71
16 4 0.29
ACGTcount: A:0.53, C:0.03, G:0.00, T:0.43
Consensus pattern (16 bp):
ATATTATAATCTAAAT
Found at i:27601 original size:17 final size:17
Alignment explanation
Indices: 27579--27633 Score: 65
Period size: 17 Copynumber: 3.2 Consensus size: 17
27569 ATCACCCCCC
27579 AGATCACTAGTGATCTA
1 AGATCACTAGTGATCTA
* * *
27596 AGATCACCAGTGGTGTA
1 AGATCACTAGTGATCTA
* *
27613 AGATCACTGGTGATCAA
1 AGATCACTAGTGATCTA
27630 AGAT
1 AGAT
27634 TACATGGGTT
Statistics
Matches: 30, Mismatches: 8, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
17 30 1.00
ACGTcount: A:0.35, C:0.16, G:0.24, T:0.25
Consensus pattern (17 bp):
AGATCACTAGTGATCTA
Found at i:29656 original size:277 final size:278
Alignment explanation
Indices: 29155--29659 Score: 676
Period size: 279 Copynumber: 1.8 Consensus size: 278
29145 TTTTAGCCAA
* * * *
29155 AAAAAAAAACCATGATGGTACACAATTTCGGCTAAAATTTTACAAAACTTGACCGGAAATATTTT
1 AAAAAAAAACCATGATGGTACACAATTTCGGCTAAAATTTCACAAAAATTAACCCGAAATATTTT
* * * *
29220 TCTCAATTTTTAGCCACAATACTCATAAAAAATATATAATTTAACGCTAAAAAAATTGAATGGCT
66 TCTCAATTTTTAGCCACAAGACTCATAAAAAATATATAATTAAAAGCCAAAAAAATTGAATGGCT
* * * * * * *
29285 TCTCATGCTTCTAATATCGTTTTTCCTATTTGTTTTCAAATTAATTTCTAATTGAATTAAAATAT
131 TCTCACGCTTCTAATATCGTTTTTCATATTTGTTCTCAAATTAATTTCTAATTAAATCAAAACAA
*
29350 GATTCAAATGCTCGTAAAAACAAATCCTTAAATCCAATGTGGCTAAGATTTGGTTAGATGAATCC
196 CATTCAAATGCTCGTAAAAACAAATCCTTAAATCCAATGTGGCTAAGATTTGGTTAGATGAATCC
29415 CATAACGCATTTTTCGCC
261 CATAACGCATTTTTCGCC
* * * * *
29433 AAAAAAAAACCGTTATGGTACACGATTTCGGCTACAATTTCGCAAAAATTAACCCGAAATATTTT
1 AAAAAAAAACCATGATGGTACACAATTTCGGCTAAAATTTCACAAAAATTAACCCGAAATATTTT
* * * **
29498 TCCTCCATTTTTAGCCACAAGACTCATAGAATATATATAATTAAAAGCCAAAAGGATTGAA-GGA
66 T-CTCAATTTTTAGCCACAAGACTCATAAAAAATATATAATTAAAAGCCAAAAAAATTGAATGG-
* * * *
29562 C-TCTTTACGCTTTTAATATCGTTTTTCATATTT-TTCT-GAATTAATTTCTAATTAAATCGAAA
129 CTTC-TCACGCTTCTAATATCGTTTTTCATATTTGTTCTCAAATTAATTTCTAATTAAATCAAAA
*
29624 CAACATTCAGATGCTCGTAAAAACAAATCCTTAAAT
193 CAACATTCAAATGCTCGTAAAAACAAATCCTTAAAT
29660 TCATTGTGTT
Statistics
Matches: 193, Mismatches: 31, Indels: 7
0.84 0.13 0.03
Matches are distributed among these distances:
277 53 0.27
278 64 0.33
279 76 0.39
ACGTcount: A:0.38, C:0.17, G:0.11, T:0.34
Consensus pattern (278 bp):
AAAAAAAAACCATGATGGTACACAATTTCGGCTAAAATTTCACAAAAATTAACCCGAAATATTTT
TCTCAATTTTTAGCCACAAGACTCATAAAAAATATATAATTAAAAGCCAAAAAAATTGAATGGCT
TCTCACGCTTCTAATATCGTTTTTCATATTTGTTCTCAAATTAATTTCTAATTAAATCAAAACAA
CATTCAAATGCTCGTAAAAACAAATCCTTAAATCCAATGTGGCTAAGATTTGGTTAGATGAATCC
CATAACGCATTTTTCGCC
Found at i:30418 original size:331 final size:326
Alignment explanation
Indices: 29437--34383 Score: 1612
Period size: 331 Copynumber: 14.8 Consensus size: 326
29427 TTCGCCAAAA
* * * * * * * *
29437 AAAAACCGTTATGGTACACG-ATTTCGGCTACAATTTCGCAAAAATTAACCCGAAATATTTTTCC
1 AAAAACCGTGAT-ATACACGAATTTCAGCTAAAATTTTGCAAAAAATGACCCGAAAAATTTTTCC
* * * * * * * * *
29501 -TCCATTTTTAGCCA-CAAGACTCATAGAATATATATAATTAAAAGCCAAAAGGATTGAAGGACT
65 GTCAAATTTTAG-CAGAAATAATCATAAAATATATATAATTCAACGCCAAAATGATTGAAGGACT
* * *
29564 CTTT-ACGCTTTTAATATCGTTTTTCATATTTTTCTGAATTAATTTCTAATTAAATCGAAACAAC
129 -TTTCACGCTTTGAATATCGTTTTCCATA-TTTTCTGAATTAATTTCTAATTAAATCGAAACAAA
* **
29628 ATTCAGATGCTCGTAAAAACAAATCCTTAAATTCATTGTGTTTGAGATTTGATTAGATAAATATA
192 ATTCAGATGCTCGTAAAAACAAATCCTTAAATCCATTGTGGATGAGATTTGATTAGATAAATATA
* *
29693 GATATTTCAAGGAGTCTCGGCACCGAAAATCATGCAAAACTAAGCCGGGGTCCCGAAA--CGTGT
257 GATATTTCAAGGAGTCTCGGCA-CAAAAATCATGCAAAACTAA-CCGGGGTCCCGAAACGCGTTT
29756 TTT-GACC
320 TTTAGA-C
* * *
29763 TAAAACCCGTG--ATACACGATTTTCAGCTAAAATTTTGTAAAAAATGACCCGAAAAATTTTTCC
1 -AAAAACCGTGATATACACGAATTTCAGCTAAAATTTTGCAAAAAATGACCCGAAAAATTTTTCC
* * * * *
29826 GTCAAATTTTTGCATAAATAATCATTAAATATATATAATTTAACGCCAAAATGATTGGAGGACTT
65 GTCAAATTTTAGCAGAAATAATCATAAAATATATATAATTCAACGCCAAAATGATTGAAGGACTT
* *
29891 TTCACGCTTTGAATATCGTTTTTCATATATTTCTGAATTAATTTCTAATTAAATCGAAACAATAT
130 TTCACGCTTTGAATATCGTTTTCCATAT-TTTCTGAATTAATTTCTAATTAAATCGAAACAAAAT
* * * * * * * * *
29956 TCAGATACTCGTAAAAACAAATTCTGAAATCCAATGTAGCTAAGATTTGATTAGATGAATATGGA
194 TCAGATGCTCGTAAAAACAAATCCTTAAATCCATTGTGGATGAGATTTGATTAGATAAATATAGA
* * * * ** * *
30021 TATCTCAAAGAGTTTTGGCATCAAAAATCATGCAAAACTTAGTCGGGGCCCCGGAACGCG-TTTT
259 TATTTCAAGGAGTCTCGGCA-CAAAAATCATGCAAAAC-TAACCGGGGTCCCGAAACGCGTTTTT
30085 TAGAC
322 TAGAC
* * ** * *
30090 AAAAACCGTGATAATTATTACAC-AATTTCGGCTAGAATTTTGCAAAATTTGACTC-AAAATTTA
1 AAAAACCGTG---A-TA-TACACGAATTTCAGCTAAAATTTTGCAAAAAATGACCCGAAAAATT-
* * * * * * *
30153 TTTCC-TCAAGTTTTAGCCGCAGTACTTATAAAA-ATTATATAATTCAACGCTAGAAA-GATTGA
60 TTTCCGTCAAATTTTAGCAGAAATAATCATAAAATA-TATATAATTCAACGCCA-AAATGATTGA
* * * *
30215 AGG-CTTTTCATGCTTCT-AGTTTCGTTTTCCTATTATTTTCTGAAATAATTTCTAATTAAATCG
123 AGGACTTTTCACGCTT-TGAATATCGTTTTCC-A-TATTTTCTGAATTAATTTCTAATTAAATCG
* *** *
30278 AAACAAAATTCAGATGCTTGT-TTTACAAATCCTTAAATCCATTATGGATGAGATTTTG-TTAGA
185 AAACAAAATTCAGATGCTCGTAAAAACAAATCCTTAAATCCATTGTGGATGAGA-TTTGATTAGA
* * * *
30341 TTAATATAGATATTTCAAGGAGTCTCGGCGCAAAAAATCATACAACACTGAACCGGGGTCCCGAA
249 TAAATATAGATATTTCAAGGAGTCTCGGCAC-AAAAATCATGCAAAACT-AACCGGGGTCCCGAA
30406 ACGCGTTTTTTAGGA-
312 ACGCGTTTTTTA-GAC
* * *
30421 AAAAACC--G---T----G-ATTTCGGCTAATATTTTGCAAAAATTGA-CC-AAAAATAGTTTTC
1 AAAAACCGTGATATACACGAATTTCAGCTAAAATTTTGCAAAAAATGACCCGAAAAAT--TTTTC
* * * *
30474 C-TC-TATTTTTGTCTA-AAATACTCATAAAATATATATAATTCAACTCCAAAAATG-TT-AGAG
64 CGTCAAATTTTAG-C-AGAAATAATCATAAAATATATATAATTCAACGCC-AAAATGATTGA-AG
* * * * **
30534 GACTTTTCACGTTTTTAATATTGCTTTT-CATATTTTATTGAATTAAAATCTAAATTAAATCGAA
125 GACTTTTCACGCTTTGAATATCG-TTTTCCATATTTT-CTGAATTAATTTCT-AATTAAATCGAA
* * * * * *
30598 ACAAGATTCAGATGCTCGTAAAAACAAATCTTTAAATGCAATGTGGTTGAGATTTTATTAGATGT
187 ACAAAATTCAGATGCTCGTAAAAACAAATCCTTAAATCCATTGTGGATGAGATTTGATTAGA--T
** * * * * * * *
30663 GTATATATATATTTCAAGGAGCCTCGATGC-CAAAAGTCAGGCAAAACTAAGTCAGGGCCCCGAA
250 AAATATAGATATTTCAAGGAGTCTCG--GCACAAAAATCATGCAAAACTAA-CCGGGGTCCCGAA
*
30727 ACGTG-TTTTTAGCACACAC
312 ACGCGTTTTTTAG-----AC
* *
30746 AAAAAACCCTGATGGTTAGTACAC-AATTTC-GCCTAAAATTTTGCAAAAAATGACCAGAAAAAT
1 -AAAAA-CC-G-T-GATA-TACACGAATTTCAG-CTAAAATTTTGCAAAAAATGACCCGAAAAAT
* * * *
30809 TTTTCC-TCAACTTTTGGCCA-AAATACTCATGAAATATATATATATATATGTAATTTAACGCCA
59 TTTTCCGTCAAATTTTAG-CAGAAATA---AT--CATA-A-A-ATATATA--TAATTCAACGCC-
* * * ** *
30872 AAAAT-ATTGGAGGACGTTTCACGATTTTCATATCGTTTTTCATATTTTTTCTGAATTAATTTCT
112 AAAATGATTGAAGGACTTTTCACGCTTTGAATATCGTTTTCCATA--TTTTCTGAATTAATTTCT
* * * * * * * **
30936 AATTAAATCGAAATAAGATTTAGATGCTTGTAAAAATAAATCCTTAAATGCAATGTGTCTGAGAT
175 AATTAAATCGAAACAAAATTCAGATGCTCGTAAAAACAAATCCTTAAATCCATTGTGGATGAGAT
* * * * * *
31001 TTGATTAGATGAATATGGATATCTCAAGTAGTCTTAGCGC-CAAAAATCATGCAAAACTGACTC-
240 TTGATTAGATAAATATAGATATTTCAAGGAGTC-TCG-GCACAAAAATCATGCAAAACTAAC-CG
* * *
31064 GGGTCACTAGAACGC-ATTTTTA-ACC
302 GGGTCCCGA-AACGCGTTTTTTAGA-C
* * * * *
31089 AAAAATCGTGATGATTATTACACG-ATTTCGGCTAAAATTTTGCAAAAATTG-GCCGAAAAGATA
1 AAAAA-C-CG-TGA-TA-TACACGAATTTCAGCTAAAATTTTGCAAAAAATGACCCGAAAA-ATT
** * * * * *
31152 TTTCC-TCAAATTTTTTTC-TAAATTATCATAAGAAAATATATAGTTCTACGCCAAAAAT-ATTG
60 TTTCCGTCAAA-TTTTAGCAGAAATAATCATAA-AATATATATAATTCAACGCC-AAAATGATTG
* * * * *
31214 AAAGATTTTTTACGCTTCT-AATATCATTTTCC-TACTTTTTCTGAATTAATTTCTAATGAAATC
122 AAGGACTTTTCACGCTT-TGAATATCGTTTTCCATA--TTTTCTGAATTAATTTCTAATTAAATC
* * ** * * * * *
31277 GAAACAAGATTTAGATGCTCGTAAAAGTAATTCCTTAAATGCAATG-AGACAGAGATTTGATTAG
184 GAAACAAAATTCAGATGCTCGTAAAAACAAATCCTTAAATCCATTGTGGA-TGAGATTTGATTAG
* * * ** *
31341 ATGAATATAGATATTTCAAGGCA-TCTCGGCGCCAAAAATCATTCAAAACTGAA-ATGGGCCCCG
248 ATAAATATAGATATTTCAAGG-AGTCTCGGC-ACAAAAATCATGCAAAACT-AACCGGGGTCCCG
* *
31404 GAACGCG-TTTTTAGCCCAA
310 AAACGCGTTTTTTAG---AC
* * *
31423 AAAAACCGTGATGATTATTA-GACGATTTC-GACTAAAATTTTGCAAAAAAATGTCCCGAAAGAT
1 AAAAACCGTGAT-A-TA-CACGA--ATTTCAG-CTAAAATTTTGC-AAAAAATGACCCGAAAAAT
* * * * * * *
31486 ATTTCC-TTAATTTTTAACA-TAATACTCATAAAA-ATTATATAATTCAACACCAAACA-GATTG
59 TTTTCCGTCAAATTTTAGCAGAAATAATCATAAAATA-TATATAATTCAACGCCAAA-ATGATTG
* * * * *
31547 AAGGGCTTTTGACGATATT-AATATCGTTTTTCATATTTTTTCTAAATTAATTTCTAATTAAATC
122 AAGGACTTTTCACGCT-TTGAATATCGTTTTCCATA--TTTTCTGAATTAATTTCTAATTAAATC
** * ** * *
31611 GAAACATGATTCATATGCTCGTTAAAAACAAAAAAAGAAT-CTTAAATGTAATT-TGGCTAAGAT
184 GAAACAAAATTCAGATGCTCG-TAAAAAC------A-AATCCTTAAAT-CCATTGTGGATGAGAT
* * * * * * * * **
31674 TTTATTAGATGAATAAAGTTATTTCAAGGAGTGTCGGCGCCGAAAATCATGCAAAACTGAGCTAG
240 TTGATTAGATAAATATAGATATTTCAAGGAGTCTCGGC-ACAAAAATCATGCAAAACT-AACCGG
* * *
31739 TGCCCCGAAACGCG-TTTTTAGCC
303 GGTCCCGAAACGCGTTTTTTAGAC
** * *
31762 AAAAACCGTGATGGTTAGTACACG-ATTTTGGCTAAAATTTTGTAAATAATGACCCGAAAAATTT
1 AAAAACCGTGA----TA-TACACGAATTTCAGCTAAAATTTTGCAAAAAATGACCCGAAAAATTT
* * * * * * * *
31826 TTCC-TC-AATTTTTGGATAAAATACTCCTAGAATATATATAATTTAACGGCAAAATCGTGTAAT
61 TTCCGTCAAATTTTAGCA-GAAATAATCATAAAATATATATAATTCAACGCCAAAA---TG----
* * * * * *** * ** * ** * *
31889 ATAATGTCAATGTTAATTTTGAAAAGATGCCAAAAAAG-ATTGGAGTACTTTTCACGATTTTAAT
118 AT--TG--AA-G-GACTTTT--CACGCTTTGAATATCGTTTTCCA-TA-TTTTC-TGA-ATT-A-
* *** * ** * * ** * * *
31953 ATCGTTTTTCATATTTTTTCTAAATTAATTTCAAATTAAATCGAAACAAGATTCAGATGTACATA
169 A---TTTCT-A-ATTAAATCGAAACAAAATTCAGA-T-GCTCGTAA-AA-A--CA-A-AT-CCT-
* * ** * * * * * * *
32018 AAAACAAATCC-TTAAATCCAATGTGGTTGGGATTTGGTTAGATAAATAAAAATATTTCAAGGAG
219 ----TAAATCCATT--GT-GGATGAGATT-TGA-TTAGATAAAT--AT--AGATATTTCAAGGAG
* *** * *
32082 TCTCGGCGCAAAAAATCATGCAAAAC-AGAGTTGTGACCCTGTAAA-GCG-TTTTTAG-C
271 TCTCGGCAC-AAAAATCATGCAAAACTA-ACCGGGGTCCC-G-AAACGCGTTTTTTAGAC
* * * ** * *
32138 CAAAACCGTGATGGTTAATACACG-ATTTCGGCTAAAAATTTGCAAAAGTTGACCCGAAAGATAT
1 AAAAACCGTGA----T-ATACACGAATTTCAGCTAAAATTTTGCAAAAAATGACCCGAAAAATTT
* * * * *** *
32202 TTCC-TCAATTTTTGGCTA-AAATACTCATAAAAATATATATAATTCGATATCAAAAAGATTGAA
61 TTCCGTCAAATTTTAGC-AGAAATAATCAT-AAAATATATATAATTCAACGCCAAAATGATTGAA
* * * * * * *
32265 GGGCTTTTAATGCTTCT-AATATTGTTTTTCTTATTTTTTTCGAATTAATTTCTAATTAAATCGA
124 GGACTTTTCACGCTT-TGAATATCGTTTTCCATA-TTTTCT-GAATTAATTTCTAATTAAATCGA
* * * * * * * * *
32329 AATAAGATTCAGATGCTCGTAAAAA-AAATCATTAAATCTAATGCGGCTGAGATTTGGTTAGATG
186 AACAAAATTCAGATGCTCGTAAAAACAAATCCTTAAATCCATTGTGGATGAGATTTGATTAGATA
* * * * * * *
32393 AATGTAAATATTTCAAGAAGTCTTGGCACTAAAAATCATGCAAAACTGA-GGCGGGCCCCGAAAC
251 AATATAGATATTTCAAGGAGTCTCGGCAC-AAAAATCATGCAAAACTAACCG-GGGTCCCGAAAC
* *
32457 GC-ATTTTTAGCC
314 GCGTTTTTTAGAC
* * * * * *
32469 GAAAACCGTGATGGTTAGTAAATG-ATTTCGGCT-AAATTTTGCAAAAATTGACCCGAAAGATTT
1 AAAAACCGTGA----TA-TACACGAATTTCAGCTAAAATTTTGCAAAAAATGACCCGAAAAATTT
* ** * * **
32532 TTCC-TC-ATTTTCTAGC-GAAAATTCTCATAAAAAATAAATAATTCAACGCCAAAAAAATTGAA
61 TTCCGTCAAATTT-TAGCAG-AAATAATCATAAAATATATATAATTCAACGCCAAAATGATTGAA
* * * * * ** ** *
32594 AGCCTTTTTCATGCTTCT-AATTTCGTTTTTCCTATTTTATTTCAAAATTAATTTCGGATTAAAA
124 GGAC-TTTTCACGCTT-TGAATATCG-TTTTCC-A-TAT-TTTCTGAATTAATTTCTAATTAAAT
* * * *** * * * *
32658 CGAAATAAGATTTAGAAATTCGTACAAACAAATCCTTAAATACAATGTGGCTGAGATTTG----G
183 CGAAACAAAATTCAGATGCTCGTAAAAACAAATCCTTAAATCCATTGTGGATGAGATTTGATTAG
* * * * * * *
32719 -----T-TAG--A--T----GAGTCTTGGCGTCAAAAATCATGCAAAACTGACCTAGAGCCCCGG
248 ATAAATATAGATATTTCAAGGAGTCTCGGC-ACAAAAATCATGCAAAACTAACC-GGGGTCCCGA
* *
32770 AACACG-TTTTTAGCCAAAA
311 AACGCGTTTTTTAG----AC
* * * * * * * *
32789 AAAAATCATGATGGTACAC-AATTACGGCTAAAATTTT--ACAAATTGACCCGAAATATTTTT-C
1 AAAAACCGTGAT-ATACACGAATTTCAGCTAAAATTTTGCAAAAAATGACCCGAAAAATTTTTCC
* * * * * * * *
32850 -TCAATTTTTAGCCA-CAATACTCATAAAAAATATATTATTCAACGCCAAAAAGATGGAAGG-GT
65 GTCAAATTTTAG-CAGAAATAATCATAAAATATATATAATTCAACGCCAAAATGATTGAAGGACT
* * * *
32912 TTCTCACGCTTCT-AATATCGTTTTTCC-TATTTGTTTTCATATTAATTTTTAATTAAATTGAAA
129 TT-TCACGCTT-TGAATATCG-TTTTCCATA-TT-TTCTGA-ATTAATTTCTAATTAAATCGAAA
** * * * * * *
32975 CATGATTCAAATGCTCGTAAAAACAAATCCTTAAATCCAATGTGGCTAAGATTTGGTTAGATGAA
188 CAAAATTCAGATGCTCGTAAAAACAAATCCTTAAATCCATTGTGGATGAGATTTGATTAGATAAA
* * * *
33040 TATAGATATTTCAAGGAACGT-T-GCCACTAAAAATCATGTAAAACTGACACGGGG-CCCTAAAA
253 TATAGATATTTCAAGG-A-GTCTCGGCAC-AAAAATCATGCAAAACTAAC-CGGGGTCCC-GAAA
*
33102 CGCG-TTTTTAGCCAAAAA
313 CGCGTTTTTTAG-----AC
* * * * *
33120 AAAAACTGTGATGATACAC-TATTTCGGCTAAAATTTTGCAAAAATTGACCCGAAATATTTTTCC
1 AAAAACCGTGAT-ATACACGAATTTCAGCTAAAATTTTGCAAAAAATGACCCGAAAAATTTTTCC
* * * * * * *
33184 -TCCATTTTTAGCCA-CAATAGTCATAAAAATATATATAATTCAACGTCAAAACGATTGAAGGGC
65 GTCAAATTTTAG-CAGAAATAATCAT-AAAATATATATAATTCAACGCCAAAATGATTGAAGGAC
* * * * * *
33247 TTTTGACGCTTTTAATATCGTTTTTCATATTTTTTCTAAATTAATTTCTAATTAAATTGAAACAT
128 TTTTCACGCTTTGAATATCGTTTTCCATA--TTTTCTGAATTAATTTCTAATTAAATCGAAACAA
* * * * * *
33312 GATTCAGATGCTCGTTAAAAATAAAAAAGAAT-CTTAAATACAATT-TGGCTAAGATTTTATTAG
191 AATTCAGATGCTCG-T----A-AAAACA-AATCCTTAAAT-CCATTGTGGATGAGATTTGATTAG
* * * * * * *
33375 ATGAATATA-ATTATTTCAAGGAGTGTCGGCGTA-AAAAATAATGCAAAACTGAGCTGGTGCCCC
248 ATAAATATAGA-TATTTCAAGGAGTCTCGGC--ACAAAAATCATGCAAAACT-AACCGGGGTCCC
* *
33438 GAAACTCG-TTTTTAGCC
309 GAAACGCGTTTTTTAGAC
* ** * *
33455 CAAAACCGTGATGGTTAGTACACG-ATTTTGGCTAAAATTTTGCAAAAAAATTACCCGAAAAAAT
1 AAAAACCGTGA----TA-TACACGAATTTCAGCTAAAATTTTGC-AAAAAATGACCCGAAAAATT
* * * * * * * *
33519 TTTCC-TC-AATTTTCTG-ATAAAATACTCTTAAAATATATATAATTTAACGTCAAAAAGATTGG
60 TTTCCGTCAAATTTT-AGCA-GAAATAATCATAAAATATATATAATTCAACGCCAAAATGATTGA
* * * ** *
33581 AGGACTTTTCACGCTTTTAATATCTTTTTTTTTCATATTTTTCTTTATTAATTTCTAATTGAATC
123 AGGACTTTTCACGCTTTGAATATC---GTTTTCCATA-TTTTCTGAATTAATTTCTAATTAAATC
* * * * ** * * *
33646 GAAACAAGATTTAGATGCTTGTAAAAAGAAATTTTTAAACCCAATGTGGCTGAGATTTGATTAGA
184 GAAACAAAATTCAGATGCTCGTAAAAACAAATCCTTAAATCCATTGTGGATGAGATTTGATTAGA
* * * * * * * * *
33711 TGAATATAGATATCTCAAGTAGCCTTGGCGTCGAAAATCATGC-AAACTGAGCCGAGG-CCAC-A
249 TAAATATAGATATTTCAAGGAGTCTCGGC-ACAAAAATCATGCAAAACT-AACCGGGGTCC-CGA
* **
33773 GAACG-TTTTTTTATCC
311 -AACGCGTTTTTTAGAC
** * * ** * * **
33789 AAAAACTATTATGGTTATTACGCG-ATTTCAGCTAAAATTTTGTGAAAATTGACCCGAAAGATAA
1 AAAAAC---CGT-GATA-TACACGAATTTCAGCTAAAATTTTGCAAAAAATGACCCGAAAAATTT
* * * * * *
33853 TTCC-TCAATTTTTGGCTA-AAATACTCATAAAAAATATATAACTCAACGCCAAAAAGATTGAAG
61 TTCCGTCAAATTTTAGC-AGAAATAATCATAAAATATATATAATTCAACGCCAAAATGATTGAAG
* * ** * **
33916 GGCTTTTGACG-TTTCTTATATCGTTTTTCCTATTTTTTCCAAATTAATTTCTAATTAAATCGAA
125 GACTTTTCACGCTTT-GAATATCG-TTTTCC-ATATTTTCTGAATTAATTTCTAATTAAATCGAA
* * * * * * *
33980 ACAAAACTCAGATGCTCGTCAAGACAAATCCTTAAATCTAATGTGGGTGAGATTTGATTAGATGA
187 ACAAAATTCAGATGCTCGTAAAAACAAATCCTTAAATCCATTGTGGATGAGATTTGATTAGATAA
* * * * * * *
34045 ATATAGATATTTCAAGTAGTCTCGG-AGCCAGAAATCAGGCAAAATTGAGCCGGGTTCCCAAAAC
252 ATATAGATATTTCAAGGAGTCTCGGCA--CAAAAATCATGCAAAACT-AACCGGGGTCCCGAAAC
* *
34109 GTG-TTTTTAGCAAAA
314 GCGTTTTTTAG---AC
* * * *
34124 AAAAACTGTGATGGTTTGCTAGTACACG-ATTTCAACTAAAATTTTACAAAAAAAATTGACACGA
1 AAAAACCGTGA--------TA-TACACGAATTTCAGCTAAAATTTTGC--AAAAAA-TGACCCGA
* * * * * *
34188 AAGATTTCTT-C-TCAATTTTTGGCTA-AAATACTCATAAAA-ATATATAATTCAATGCCAAAAA
54 AAAATTT-TTCCGTCAAATTTTAGC-AGAAATAATCATAAAATATATATAATTCAACGCCAAAAT
** * * * * * *
34249 GATTGAAGGGTTTTTTACGCTTTTAATATCGTATTTCTTATTTTTTCTAAATTAATTTCTTATTA
117 GATTGAAGGACTTTTCACGCTTTGAATATCGT-TTTC-CATATTTTCTGAATTAATTTCTAATTA
* ** * * *
34314 AATCGAAACAAGATTCAGATGCTCGTAAAAACAAATTTTTAAATCCAATGTTGCTGAGATTATG-
180 AATCGAAACAAAATTCAGATGCTCGTAAAAACAAATCCTTAAATCCATTGTGGATGAGATT-TGA
34378 TTAGAT
244 TTAGAT
34384 GATGTAAAGT
Statistics
Matches: 3564, Mismatches: 710, Indels: 678
0.72 0.14 0.14
Matches are distributed among these distances:
310 2 0.00
311 4 0.00
312 66 0.02
313 22 0.01
314 45 0.01
315 55 0.02
316 50 0.01
317 85 0.02
318 51 0.01
319 35 0.01
320 16 0.00
321 53 0.01
322 4 0.00
323 4 0.00
324 9 0.00
325 42 0.01
326 218 0.06
327 17 0.00
328 4 0.00
329 45 0.01
330 214 0.06
331 364 0.10
332 243 0.07
333 227 0.06
334 213 0.06
335 162 0.05
336 18 0.01
337 15 0.00
338 28 0.01
339 169 0.05
340 155 0.04
341 265 0.07
342 149 0.04
343 10 0.00
344 3 0.00
345 4 0.00
346 4 0.00
347 8 0.00
348 57 0.02
349 6 0.00
350 112 0.03
351 14 0.00
352 13 0.00
353 9 0.00
354 26 0.01
355 3 0.00
356 5 0.00
357 1 0.00
359 1 0.00
360 5 0.00
361 6 0.00
362 30 0.01
363 5 0.00
364 10 0.00
365 2 0.00
366 2 0.00
367 3 0.00
368 2 0.00
369 4 0.00
370 3 0.00
371 4 0.00
372 1 0.00
373 6 0.00
374 1 0.00
375 2 0.00
376 77 0.02
377 72 0.02
378 4 0.00
ACGTcount: A:0.37, C:0.15, G:0.14, T:0.34
Consensus pattern (326 bp):
AAAAACCGTGATATACACGAATTTCAGCTAAAATTTTGCAAAAAATGACCCGAAAAATTTTTCCG
TCAAATTTTAGCAGAAATAATCATAAAATATATATAATTCAACGCCAAAATGATTGAAGGACTTT
TCACGCTTTGAATATCGTTTTCCATATTTTCTGAATTAATTTCTAATTAAATCGAAACAAAATTC
AGATGCTCGTAAAAACAAATCCTTAAATCCATTGTGGATGAGATTTGATTAGATAAATATAGATA
TTTCAAGGAGTCTCGGCACAAAAATCATGCAAAACTAACCGGGGTCCCGAAACGCGTTTTTTAGA
C
Found at i:30816 original size:657 final size:651
Alignment explanation
Indices: 29450--31642 Score: 1640
Period size: 657 Copynumber: 3.3 Consensus size: 651
29440 AACCGTTATG
* * * * * * *
29450 GTACACGATTTCGGCTACAATTTCGCAAAAATTAACCCGAAATATTTTTCCTCCATTTTTAGCCA
1 GTACACAATTTCGGCTAAAATTTTGCAAAAATTGA-CCGAAAAATTTTTCCTCAACTTTTAGCCA
* *
29515 CAAGACTCATAGAATATATATAATTAAAAGCCAAAAGGATTGAAGGACTCTTTACGCTTTTAATA
65 CAAGACTCATAAAATATATATAATTAAAAGCCAAAAGGATTGAAGGACTCTTTACGCTTCTAATA
* * *
29580 TCGTTTTTCATATTTTTCTGAATTAATTTCTAATTAAATCGAAACAACATTCAGATGCTCGTAAA
130 TCGTTTTCCATATTTTTCTGAAATAATTTCTAATTAAATCGAAACAAAATTCAGATGCTCGTAAA
* * **
29645 AACAAATCCTTAAATTCATTGTGTTTGAGATTTGATTAGATAAATATAGATATTTCAAGGAGTCT
195 AACAAATCCTTAAATCCATTATGGATGAGATTTGATTAGATAAATATAGATATTTCAAGGAGTCT
** * * * *
29710 CGGCACCGAAAATCATGCAAAACTAAGCCGGGGTCCCGAAACGTGTTTTGACCTAAAACCCGTGA
260 CGGCACAAAAAATCATACAAAACTAAGCCGGGGTCCCGAAACGCGTTTTGACCAAAAAACCG-GA
*
29775 TACACGATTTTCAGCTAAAATTTTGTAAAAAATGACCCGAAAAATTTTTCCGTCAAATTTTTGCA
324 T--A-GATTTTCAGCTAAAATTTTGCAAAAAATGACCCGAAAAATTTTTCCGTCAAATTTTTGCA
* * *
29840 TAAATAATCATTAAATATATATAATTTAACGCCAAAATGATTGGAGGACTTTTCACGCTTTGAAT
386 TAAATAATCATAAAATATATATAATTCAACGCCAAAATGATTAGAGGACTTTTCACGCTTTGAAT
* ** *
29905 ATCGTTTTTCATATATTTCTGAATTAATTTCTAATTAAATCGAAACAATATTCAGATACTCGTAA
451 ATCGCTTTTCATATATTTCTGAATTAAAATCTAATTAAATCGAAACAAGATTCAGATACTCGTAA
* **
29970 AAACAAATTCTGAAATCCAATGTAGCTAAGATTTGATTAGATGAATATGGATATCTCAAAGAGTT
516 AAACAAATTCTGAAATCCAATGTAGCTAAGATTTGATTAGATGAATATAGATATCTCAAAGAGCC
* * * * * *
30035 TTGGCATCAAAAATCATGCAAAACTTAGTCGGGGCCCCGGAACGCGTTTTTAGACAAAAACCGTG
581 TCGGCA-CAAAAATCAGGCAAAACTAAGTCAGGGCCCCGAAACGCGTTTTTAGACAAAAACCCTG
30100 ATAATTA
645 ATAATTA
* * * * *
30107 TTACACAATTTCGGCTAGAATTTTGCAAAATTTGACTC-AAAATTTATTTCCTCAAGTTTTAGCC
1 GTACACAATTTCGGCTAAAATTTTGCAAAAATTGAC-CGAAAAATT-TTTCCTCAACTTTTAGCC
* * * * * *
30171 GC-AGTACTTATAAAA-ATTATATAATTCAACGCTAGAAA-GATTGAAGG-CT-TTTCATGCTTC
64 ACAAG-ACTCATAAAATA-TATATAATTAAAAGCCA-AAAGGATTGAAGGACTCTTT-ACGCTTC
* *
30231 TAGTTTCGTTTTCC-TATTATTTTCTGAAATAATTTCTAATTAAATCGAAACAAAATTCAGATGC
125 TAATATCGTTTTCCATA-T-TTTTCTGAAATAATTTCTAATTAAATCGAAACAAAATTCAGATGC
* *** *
30295 TTGT-TTTACAAATCCTTAAATCCATTATGGATGAGATTTTG-TTAGATTAATATAGATATTTCA
188 TCGTAAAAACAAATCCTTAAATCCATTATGGATGAGA-TTTGATTAGATAAATATAGATATTTCA
* * * **
30358 AGGAGTCTCGGCGCAAAAAATCATACAACACTGAA-CCGGGGTCCCGAAACGCGTTTTTTAGGAA
252 AGGAGTCTCGGCACAAAAAATCATACAAAACT-AAGCCGGGGTCCCGAAACGCG-TTTTGACCAA
* * * *
30422 AAAACC-G-T-GA-TTTCGGCTAATATTTTGCAAAAATTGA-CC-AAAAATAGTTTTCC-TC-TA
315 AAAACCGGATAGATTTTCAGCTAAAATTTTGCAAAAAATGACCCGAAAAAT--TTTTCCGTCAAA
* *
30479 TTTTTGTC-TAAAATACTCATAAAATATATATAATTCAACTCCAAAAATG-TTAGAGGACTTTTC
378 TTTTTG-CAT-AAATAATCATAAAATATATATAATTCAACGCC-AAAATGATTAGAGGACTTTTC
* * * *
30542 ACGTTTTTAATATTGCTTTTCATAT-TTTATTGAATTAAAATCTAAATTAAATCGAAACAAGATT
440 ACGCTTTGAATATCGCTTTTCATATATTT-CTGAATTAAAATCT-AATTAAATCGAAACAAGATT
* * * * * * * *
30606 CAGATGCTCGTAAAAACAAA-TCTTTAAATGCAATGTGGTTGAGATTTTATTAGATGTGTATATA
503 CAGATACTCGTAAAAACAAATTC-TGAAATCCAATGTAGCTAAGATTTGATTAGA--TGAATATA
* * * * *
30670 TATATTTCAAGGAGCCTCGATGC-CAAAAGTCAGGCAAAACTAAGTCAGGGCCCCGAAACGTGTT
565 GATATCTCAAAGAGCCTCG--GCACAAAAATCAGGCAAAACTAAGTCAGGGCCCCGAAACGCGTT
**
30734 TTTAGCACACACAAAAAACCCTGATGGTTA
628 TTTAG-----AC-AAAAACCCTGATAATTA
* * *
30764 GTACACAATTTCGCCTAAAATTTTGCAAAAAATGACCAGAAAAATTTTTCCTCAACTTTTGGCCA
1 GTACACAATTTCGGCTAAAATTTTGCAAAAATTGACC-GAAAAATTTTTCCTCAACTTTTAGCCA
* * ** * *
30829 AAATACTCATGAAATATATATATATATATGTAATTTAACGCCAAAAATATTGGAGGACGT-TTCA
65 CAAGACTCAT--AA-A-ATATATATA-AT-TAA---AA-GCCAAAAGGATTGAAGGAC-TCTTTA
* * * * * * * *
30893 CGATTTTCATATCGTTTTTCATATTTTTTCTGAATTAATTTCTAATTAAATCGAAATAAGATTTA
119 CGCTTCTAATATCGTTTTCCATA-TTTTTCTGAAATAATTTCTAATTAAATCGAAACAAAATTCA
* * * * * ** * *
30958 GATGCTTGTAAAAATAAATCCTTAAATGCAATGTGTCTGAGATTTGATTAGATGAATATGGATAT
183 GATGCTCGTAAAAACAAATCCTTAAATCCATTATGGATGAGATTTGATTAGATAAATATAGATAT
* * ** * * * * * * * *
31023 CTCAAGTAGTCTTAGCGCCAAAAATCATGCAAAACTGA-CTC-GGGTCACTAGAACGCATTTTTA
248 TTCAAGGAGTCTCGGCACAAAAAATCATACAAAACTAAGC-CGGGGTCCCGA-AACGC-GTTTTG
* * *
31086 ACC-AAAAATCGTGAT-GATTATTACACGATTTCGGCTAAAATTTTGCAAAAATTG-GCCGAAAA
310 ACCAAAAAACCG-GATAGATT-TT---C-A-----GCTAAAATTTTGCAAAAAATGACCCGAAAA
* * * * * *
31148 GATATTTCC-TCAAATTTTTTTC-TAAATTATCATAAGAAAATATATAGTTCTACGCCAAAAAT-
364 -ATTTTTCCGTCAAA-TTTTTGCATAAATAATCATAA-AATATATATAATTCAACGCC-AAAATG
* * * * * * ** *
31210 ATT-GAAAGATTTTTTACGCTTCT-AATATC-ATTTTCCTACTTTTTCTGAATTAATTTCTAATG
425 ATTAG-AGGACTTTTCACGCTT-TGAATATCGCTTTTCATA-TATTTCTGAATTAAAATCTAATT
* * ** * *
31272 AAATCGAAACAAGATTTAGATGCTCGT-AAAAGTAATTCCTTAAATGCAATG-AGAC-AGAGATT
487 AAATCGAAACAAGATTCAGATACTCGTAAAAACAAATT-CTGAAATCCAATGTAG-CTA-AGATT
* * ** *
31334 TGATTAGATGAATATAGATATTTC-AAG-GCATCTCGGCGCCAAAAATCATTCAAAACTGAAAT-
549 TGATTAGATGAATATAGATATCTCAAAGAGC--CTCGGC-ACAAAAATCAGGCAAAACT-AAGTC
* * * *
31396 -GGGCCCCGGAACGCGTTTTTAGCCCAAAAAAACCGTGATGATTA
610 AGGGCCCCGAAACGCGTTTTTAG---ACAAAAACCCTGATAATTA
* * * * * * * * * * *
31440 TTAGACGATTTCGACTAAAATTTTGCAAAAAAATGTCCCGAAAGATATTTCCTTAATTTTTA-AC
1 GTACACAATTTCGGCTAAAATTTTGC-AAAAATTG-ACCGAAAAATTTTTCCTCAACTTTTAGCC
* * * * *
31504 ATAATACTCATAAAA-ATTATATAATTCAACA-CCAAACA-GATTGAAGGGCT-TTTGACGATAT
64 ACAAGACTCATAAAATA-TATATAATT-AAAAGCCAAA-AGGATTGAAGGACTCTTT-ACGCT-T
* ** *
31565 -TAATATCGTTTTTCATATTTTTTCT-AAATTAATTTCTAATTAAATCGAAACATGATTCATATG
124 CTAATATCGTTTTCCATA-TTTTTCTGAAA-TAATTTCTAATTAAATCGAAACAAAATTCAGATG
31628 CTCGTTAAAAACAAA
187 CTCG-TAAAAACAAA
31643 AAAAGAATCT
Statistics
Matches: 1234, Mismatches: 207, Indels: 180
0.76 0.13 0.11
Matches are distributed among these distances:
647 17 0.01
648 80 0.06
649 98 0.08
650 2 0.00
651 59 0.05
653 2 0.00
654 1 0.00
655 6 0.00
656 121 0.10
657 207 0.17
658 10 0.01
659 2 0.00
660 1 0.00
661 7 0.01
662 3 0.00
663 2 0.00
665 5 0.00
666 79 0.06
667 21 0.02
668 80 0.06
669 86 0.07
670 2 0.00
671 8 0.01
672 8 0.01
673 3 0.00
674 2 0.00
676 49 0.04
677 29 0.02
678 6 0.00
679 22 0.02
680 33 0.03
681 10 0.01
682 101 0.08
683 61 0.05
684 11 0.01
ACGTcount: A:0.37, C:0.16, G:0.14, T:0.34
Consensus pattern (651 bp):
GTACACAATTTCGGCTAAAATTTTGCAAAAATTGACCGAAAAATTTTTCCTCAACTTTTAGCCAC
AAGACTCATAAAATATATATAATTAAAAGCCAAAAGGATTGAAGGACTCTTTACGCTTCTAATAT
CGTTTTCCATATTTTTCTGAAATAATTTCTAATTAAATCGAAACAAAATTCAGATGCTCGTAAAA
ACAAATCCTTAAATCCATTATGGATGAGATTTGATTAGATAAATATAGATATTTCAAGGAGTCTC
GGCACAAAAAATCATACAAAACTAAGCCGGGGTCCCGAAACGCGTTTTGACCAAAAAACCGGATA
GATTTTCAGCTAAAATTTTGCAAAAAATGACCCGAAAAATTTTTCCGTCAAATTTTTGCATAAAT
AATCATAAAATATATATAATTCAACGCCAAAATGATTAGAGGACTTTTCACGCTTTGAATATCGC
TTTTCATATATTTCTGAATTAAAATCTAATTAAATCGAAACAAGATTCAGATACTCGTAAAAACA
AATTCTGAAATCCAATGTAGCTAAGATTTGATTAGATGAATATAGATATCTCAAAGAGCCTCGGC
ACAAAAATCAGGCAAAACTAAGTCAGGGCCCCGAAACGCGTTTTTAGACAAAAACCCTGATAATT
A
Found at i:34765 original size:18 final size:20
Alignment explanation
Indices: 34725--34792 Score: 66
Period size: 21 Copynumber: 3.2 Consensus size: 20
34715 TATATATTTT
*
34725 TTATTTATTTTAAACTCATTA
1 TTATTTA-TTTAAAATCATTA
*
34746 TTATTTATTTAAAATATATTTA
1 TTATTTATTTAAAAT-CA-TTA
34768 TTATTTATTTAATAAT-ATATA
1 TTATTTATTTAA-AATCAT-TA
34789 TTAT
1 TTAT
34793 ATCTAAGATA
Statistics
Matches: 41, Mismatches: 2, Indels: 8
0.80 0.04 0.16
Matches are distributed among these distances:
20 8 0.20
21 15 0.37
22 15 0.37
23 3 0.07
ACGTcount: A:0.38, C:0.03, G:0.00, T:0.59
Consensus pattern (20 bp):
TTATTTATTTAAAATCATTA
Found at i:34787 original size:25 final size:22
Alignment explanation
Indices: 34710--34792 Score: 89
Period size: 22 Copynumber: 3.7 Consensus size: 22
34700 CTTTTAGTAA
*
34710 TTAAATATATATTTTTTATTTATT
1 TTAAA-ATATATTTATTATTTA-T
* *
34734 TTAAACT-CA-TTATTATTTAT
1 TTAAAATATATTTATTATTTAT
34754 TTAAAATATATTTATTATTTAT
1 TTAAAATATATTTATTATTTAT
34776 TTAATAATATATATTAT
1 TTAA-AATATAT-TTAT
34793 ATCTAAGATA
Statistics
Matches: 50, Mismatches: 5, Indels: 8
0.79 0.08 0.13
Matches are distributed among these distances:
20 7 0.14
21 10 0.20
22 16 0.32
23 8 0.16
24 9 0.18
ACGTcount: A:0.39, C:0.02, G:0.00, T:0.59
Consensus pattern (22 bp):
TTAAAATATATTTATTATTTAT
Found at i:35268 original size:15 final size:16
Alignment explanation
Indices: 35250--35279 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
35240 ATAAATAATA
35250 ATATTATAAT-TAAAT
1 ATATTATAATCTAAAT
35265 ATATTATAATCTAAA
1 ATATTATAATCTAAA
35280 AAACTTATTA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 10 0.71
16 4 0.29
ACGTcount: A:0.53, C:0.03, G:0.00, T:0.43
Consensus pattern (16 bp):
ATATTATAATCTAAAT
Found at i:35553 original size:5 final size:5
Alignment explanation
Indices: 35525--35569 Score: 60
Period size: 5 Copynumber: 9.4 Consensus size: 5
35515 CGTGATTTTA
35525 TATAG TAATA- TATA- TATA- TATAG TATAG TATAG TATAG TATAG TA
1 TATAG T-ATAG TATAG TATAG TATAG TATAG TATAG TATAG TATAG TA
35570 AGATAAGATG
Statistics
Matches: 38, Mismatches: 0, Indels: 4
0.90 0.00 0.10
Matches are distributed among these distances:
4 11 0.29
5 24 0.63
6 3 0.08
ACGTcount: A:0.44, C:0.00, G:0.13, T:0.42
Consensus pattern (5 bp):
TATAG
Found at i:47742 original size:190 final size:192
Alignment explanation
Indices: 47411--47774 Score: 579
Period size: 190 Copynumber: 1.9 Consensus size: 192
47401 ATTTTCTTTG
* * * * *
47411 TTCTATTTTTTTTCTAATCCAGTATCTGGTGATCATATTGGATTTCGATTACTTCAAAGTCAAGG
1 TTCTATTTTTTTACTAAACCAGTATCTGGTAATCACATTGGATTTCGACTACTTCAAAGTCAAGG
* *
47476 TGCGTCGAATCCCATATGAGAAAGCCCTCCCAATACCTGTTTTCGCCATTCGCAAGATTGAACCC
66 CGCGTCGAATCCCATATGAGAAAGCCCTCCCAACACCTGTTTTCGCCATTCGCAAGATTGAACCC
* *
47541 GAAACTTTACTT-AA-GGACATTGAGCTCCTTCCACTCAATCCAACATGTATTGATTTAATT
131 GAAACTTTACTTAAAGGGACATCGAGCTCCTTCCAATCAATCCAACATGTATTGATTTAATT
47601 TTCTATTTTTTTACTAAACCAGTATCTGGTAATCACATTGGATTTCGACTACTTCAAAGTCAAGG
1 TTCTATTTTTTTACTAAACCAGTATCTGGTAATCACATTGGATTTCGACTACTTCAAAGTCAAGG
* * * *
47666 CGCGTCGAATCTCATATGAGAAAGCCCTCCTAACATCTGTTTTCGCCATTCGCAAGATTGAATCC
66 CGCGTCGAATCCCATATGAGAAAGCCCTCCCAACACCTGTTTTCGCCATTCGCAAGATTGAACCC
* *
47731 GAAATTTTACTTAAAGGGACATCGGGCTCCTTCCAATCAATCCA
131 GAAACTTTACTTAAAGGGACATCGAGCTCCTTCCAATCAATCCA
47775 GTGTTGGTTT
Statistics
Matches: 157, Mismatches: 15, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
190 130 0.83
191 2 0.01
192 25 0.16
ACGTcount: A:0.28, C:0.24, G:0.15, T:0.33
Consensus pattern (192 bp):
TTCTATTTTTTTACTAAACCAGTATCTGGTAATCACATTGGATTTCGACTACTTCAAAGTCAAGG
CGCGTCGAATCCCATATGAGAAAGCCCTCCCAACACCTGTTTTCGCCATTCGCAAGATTGAACCC
GAAACTTTACTTAAAGGGACATCGAGCTCCTTCCAATCAATCCAACATGTATTGATTTAATT
Done.