Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01013934.1 Corchorus olitorius cultivar O-4 contig13967, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  49179

Tables:   1   

This is table  1  of  1  ( 15 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1979--2040
31
2.0
31
90
0
97
43
6
20
29
1.77
7655--7872
109
2.0
109
91
0
355
31
11
13
44
1.78
8898--8945
22
2.3
21
78
7
53
12
52
0
35
1.40
13066--13092
14
1.9
14
100
0
54
25
7
14
51
1.68
16165--16200
18
2.0
18
100
0
72
16
22
27
33
1.95
19878--19932
27
2.1
26
83
16
69
60
1
27
10
1.41
23622--23794
87
2.0
87
96
0
319
32
15
12
39
1.84
28882--29969
538
2.0
539
98
0
2106
22
23
17
36
1.94
39115--39194
40
2.0
40
100
0
160
22
17
10
50
1.76
39213--39271
26
2.3
26
93
0
100
16
6
23
52
1.68
41147--41286
6
23.3
6
83
0
118
54
1
40
3
1.27
45622--45646
6
4.2
6
100
0
50
48
52
0
0
1.00
46100--46132
12
2.7
13
86
13
52
39
15
0
45
1.46
46448--46491
21
2.1
21
83
8
54
47
2
0
50
1.13
46406--46488
30
3.0
27
83
10
112
43
3
3
49
1.37

Tables:   1

The End!