Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01013939.1 Corchorus olitorius cultivar O-4 contig13972, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  109694

Tables:   1   

This is table  1  of  1  ( 38 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3557--3599
20
2.2
20
86
0
59
13
23
18
44
1.86
6542--6598
25
2.4
24
88
5
80
59
3
5
31
1.36
7143--7328
105
1.8
101
88
7
268
49
2
12
36
1.52
7737--7813
32
2.6
29
86
11
104
22
6
14
57
1.60
10787--10836
22
2.3
22
82
6
57
40
18
6
36
1.75
10909--11467
22
24.7
22
66
18
167
34
15
10
38
1.82
10888--11055
43
3.8
44
75
9
164
33
17
11
37
1.86
10909--11055
43
3.3
43
76
7
170
31
17
12
38
1.87
10954--11162
107
2.0
107
84
5
280
34
17
10
36
1.84
11403--11466
23
2.8
23
97
2
121
42
9
9
39
1.70
17604--17666
31
2.1
31
96
3
119
42
15
7
33
1.76
25560--25602
20
2.2
20
82
0
50
23
20
30
25
1.99
28980--29140
69
2.3
70
85
1
216
20
29
23
26
1.99
30835--30920
42
2.0
42
91
4
138
18
31
3
46
1.66
34364--34403
17
2.4
16
84
12
53
27
5
20
47
1.70
38160--38190
1
31.0
1
100
0
62
100
0
0
0
0.00
38528--38575
23
2.1
23
92
0
78
16
2
43
37
1.60
39809--40170
124
2.9
123
86
4
471
25
27
23
23
2.00
41438--41494
30
2.0
28
86
6
78
54
0
19
26
1.44
41878--42035
25
6.3
25
88
0
235
17
16
30
36
1.92
65947--65990
22
2.0
22
91
4
72
56
9
6
27
1.55
79470--79515
1
46.0
1
95
0
83
0
2
0
97
0.15
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
80982--81011
14
2.1
14
93
0
51
30
16
6
46
1.73
84532--84608
28
2.7
30
73
18
74
38
10
15
35
1.82
86079--86116
16
2.4
16
87
12
53
7
15
39
36
1.77
86168--86201
17
2.0
17
94
0
59
0
17
38
44
1.49
86107--86243
68
2.0
67
91
1
220
9
16
35
39
1.81
86996--87036
2
20.5
2
85
9
57
48
2
2
46
1.28
87390--87433
16
2.8
16
85
0
70
4
13
40
40
1.65
89230--89397
84
2.0
84
95
0
300
24
13
35
26
1.93
90315--90424
31
3.5
31
86
0
139
29
17
26
27
1.97
98073--98111
5
7.4
5
97
2
60
38
0
0
61
0.96
98355--98458
46
2.3
46
94
0
181
41
12
5
40
1.67
102772--102816
22
2.0
22
95
0
81
13
6
44
35
1.70
102930--103018
44
2.0
44
91
0
142
25
22
24
26
2.00
107441--107549
53
2.1
53
87
0
155
32
20
22
25
1.98
109573--109647
24
3.2
24
62
11
66
22
24
21
32
1.98
109565--109655
45
2.0
45
100
0
182
21
21
23
32
1.98

Tables:   1

The End!