Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01013941.1 Corchorus olitorius cultivar O-4 contig13974, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3775
ACGTcount: A:0.36, C:0.19, G:0.14, T:0.30


Found at i:1800 original size:14 final size:14

Alignment explanation


    Indices: 1781--1838  Score: 55
    Period size: 14  Copynumber: 4.1  Consensus size: 14

       1771 CTTTTTTTTA

                           
       1781 TTAAAAGAAT-ATTT
          1 TTAAAA-AATAATTT

                          
       1795 TTAAAAAATAATTT
          1 TTAAAAAATAATTT

              **          
       1809 TTTTAAAATAATTT
          1 TTAAAAAATAATTT

             *    *  *    
       1823 TGAAAATATTATTT
          1 TTAAAAAATAATTT

              
       1837 TT
          1 TT

       1839 TGAACTAAAA


Statistics
Matches: 35,  Mismatches: 8, Indels: 2
        0.78            0.18        0.04

Matches are distributed among these distances:
  13    3  0.09
  14   32  0.91

ACGTcount: A:0.47, C:0.00, G:0.03, T:0.50


Consensus pattern (14 bp):   
TTAAAAAATAATTT

Found at i:1802 original size:16 final size:16

Alignment explanation


    Indices: 1783--1816  Score: 50
    Period size: 16  Copynumber: 2.1  Consensus size: 16

       1773 TTTTTTTATT

                            
       1783 AAAAGAATATTTTTAA
          1 AAAAGAATATTTTTAA

                *   *       
       1799 AAAATAATTTTTTTAA
          1 AAAAGAATATTTTTAA

              
       1815 AA
          1 AA

       1817 TAATTTTGAA


Statistics
Matches: 16,  Mismatches: 2, Indels: 0
        0.89            0.11        0.00

Matches are distributed among these distances:
  16   16  1.00

ACGTcount: A:0.56, C:0.00, G:0.03, T:0.41


Consensus pattern (16 bp):   
AAAAGAATATTTTTAA
Done.