Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01013942.1 Corchorus olitorius cultivar O-4 contig13975, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  77423

Tables:   1   

This is table  1  of  1  ( 21 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1541--1717
93
1.9
93
91
0
291
51
1
12
33
1.48
1716--1777
31
2.0
31
90
0
97
43
6
20
29
1.77
1836--1883
24
2.0
24
95
0
87
39
16
18
25
1.91
1888--1946
30
2.1
28
87
12
86
25
10
23
40
1.86
8371--8414
19
2.3
19
80
0
52
43
0
43
13
1.44
10039--10069
16
1.9
16
93
0
53
12
12
12
61
1.58
14316--14346
16
1.9
16
93
0
53
12
9
12
64
1.50
21332--21366
17
2.1
17
94
0
61
42
11
20
25
1.85
38748--38815
33
2.1
33
100
0
136
35
8
11
44
1.72
39546--39591
24
1.9
24
95
0
83
4
32
0
63
1.14
53811--53841
2
15.5
2
100
0
62
48
0
0
51
1.00
54312--54413
31
3.3
31
85
0
132
38
26
9
25
1.87
55331--55369
2
19.5
2
100
0
78
48
0
0
51
1.00
56302--56338
19
2.0
19
89
5
58
35
0
0
64
0.94
56761--56818
29
2.0
29
100
0
116
44
17
6
31
1.75
68708--69135
145
3.0
145
91
1
689
30
18
20
29
1.97
73231--73276
17
2.7
17
86
0
56
52
4
2
41
1.33
73823--74250
211
2.0
214
87
3
610
36
20
7
34
1.81
75010--75096
41
2.1
41
87
6
124
27
20
22
28
1.99
75468--75519
25
2.1
25
100
0
104
46
15
7
30
1.74
77384--77423
2
20.0
2
100
0
80
50
0
0
50
1.00

Tables:   1

The End!