genome.fa.s13943.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01013943.1 Corchorus olitorius cultivar O-4 contig13976, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  103700

Tables:   1   

This is table  1  of  1  ( 34 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57--112	29	1.9	29	92	0	94	35	25	7	32	1.83
2505--2562	26	2.2	26	96	3	107	48	3	15	32	1.62
3832--3860	15	1.9	15	100	0	58	20	13	24	41	1.89
15589--15631	18	2.3	18	80	11	52	9	34	6	48	1.62
15638--15761	62	2.0	62	100	0	248	12	46	4	35	1.64
27213--27240	13	2.2	13	100	0	56	46	0	14	39	1.44
27863--28199	48	7.0	48	91	1	550	45	10	30	13	1.77
27863--28299	96	4.8	96	84	10	592	44	9	31	13	1.77
27863--28302	144	3.2	141	86	8	583	44	9	31	14	1.77
28061--28302	130	1.9	124	88	5	358	43	9	32	14	1.77
28157--28233	34	2.3	34	90	0	118	42	9	29	18	1.81
28109--28260	82	1.9	82	94	0	268	42	9	32	16	1.80
28216--28312	42	2.3	42	96	0	185	47	7	34	11	1.67
27894--28312	48	9.3	40	76	15	157	44	9	31	14	1.77
28191--28317	42	2.8	46	79	16	147	46	7	33	12	1.69
30856--30897	21	2.0	22	95	4	77	21	30	23	23	1.99
32140--32213	33	2.3	32	85	2	103	51	8	18	21	1.72
32300--32342	22	2.0	22	86	9	61	0	9	18	72	1.11
33056--33156	51	2.0	49	96	3	184	34	7	9	47	1.66
35287--35513	113	2.0	111	93	1	391	37	27	5	29	1.80
41160--41189	15	2.1	14	93	6	51	33	0	0	66	0.92
42886--43051	26	6.4	26	94	0	269	49	13	23	13	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44659--44692	14	2.3	15	90	5	52	67	0	0	32	0.91
45795--45940	72	2.0	72	91	0	238	28	12	19	39	1.88
46707--46796	30	3.0	30	100	0	180	43	23	16	16	1.87
52514--52548	12	2.9	12	91	0	61	0	45	0	54	0.99
71694--71795	37	3.0	37	70	26	125	39	12	13	34	1.83
71721--71773	27	2.0	27	96	0	97	37	15	15	32	1.88
82049--82089	12	3.3	13	83	10	59	36	2	7	53	1.42
89275--89333	24	2.5	24	85	0	82	37	27	13	22	1.91
92765--92793	15	1.9	15	100	0	58	51	0	6	41	1.28
92929--92982	17	3.2	17	71	10	56	68	11	3	16	1.33
98682--98778	31	3.2	31	74	11	94	39	10	22	27	1.87
103083--103108	13	2.0	13	100	0	52	30	7	15	46	1.74

Tables:   1

The End!