Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01013944.1 Corchorus olitorius cultivar O-4 contig13977, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  60512

Tables:   1   

This is table  1  of  1  ( 32 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5773--5798
2
13.0
2
100
0
52
50
0
0
50
1.00
6883--6907
2
12.5
2
100
0
50
48
0
0
52
1.00
14484--14599
57
2.0
57
94
0
205
40
1
24
33
1.65
16614--16918
157
1.9
157
97
0
583
28
26
11
34
1.91
17111--17204
45
2.2
43
88
7
138
38
21
5
35
1.76
18021--18056
2
17.5
2
94
5
63
50
0
2
47
1.15
19514--19544
10
3.1
10
90
0
53
0
48
0
51
1.00
19672--19732
2
30.5
2
86
0
86
45
3
3
47
1.35
30768--30816
19
2.6
19
96
0
89
32
14
8
44
1.74
32318--32484
83
2.0
83
98
0
325
36
16
14
32
1.89
37283--37324
15
2.8
15
100
0
84
23
14
0
61
1.32
40946--40982
19
1.9
19
94
0
65
29
18
13
37
1.90
41751--41800
2
24.0
2
88
8
73
48
4
2
46
1.32
45519--45574
21
2.8
20
83
5
69
35
10
21
32
1.88
50780--50823
21
2.1
21
100
0
88
43
18
13
25
1.86
51115--51200
43
2.0
43
100
0
172
27
18
16
37
1.92
51509--51539
14
2.2
14
100
0
62
16
25
6
51
1.68
53324--53352
9
3.2
9
100
0
58
20
48
20
10
1.79
53666--53730
20
3.2
20
77
12
60
43
10
3
43
1.55
53742--53800
22
2.7
22
83
0
73
35
13
8
42
1.75
53818--53865
22
2.1
23
84
3
62
50
18
6
25
1.70
53927--54071
41
3.4
45
79
11
128
38
16
8
36
1.79
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
53927--54176
22
11.8
21
72
13
190
39
16
7
36
1.77
53927--54173
63
3.9
62
76
9
214
38
16
7
36
1.78
54019--54157
62
2.2
62
81
5
163
40
15
7
36
1.75
54491--54549
22
2.7
22
80
12
59
35
15
8
40
1.77
54515--54885
22
16.8
22
71
12
188
36
17
9
35
1.83
54616--54722
43
2.5
44
84
4
128
31
20
9
38
1.84
54516--54723
87
2.4
85
76
13
201
35
17
10
37
1.84
54696--54749
27
2.0
27
92
0
90
33
12
5
48
1.65
59969--60049
39
2.0
40
90
2
128
51
8
3
35
1.50
60040--60086
25
1.9
24
95
4
85
29
6
8
55
1.55

Tables:   1

The End!