Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01013945.1 Corchorus olitorius cultivar O-4 contig13978, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 601

Length: 1003
ACGTcount: A:0.38, C:0.10, G:0.14, T:0.38


Found at i:483 original size:36 final size:36

Alignment explanation


    Indices: 436--505  Score: 104
    Period size: 36  Copynumber: 1.9  Consensus size: 36

        426 GAGATTTTGG

                         *      *               
        436 AGAAATATGATAATCAAAATTACAAAAAATGTAATA
          1 AGAAATATGATAACCAAAATCACAAAAAATGTAATA

                                  *    *      
        472 AGAAATATGATAACCAAAATCATAAAAGATGTAA
          1 AGAAATATGATAACCAAAATCACAAAAAATGTAA

        506 GGTTATTGAA


Statistics
Matches: 30,  Mismatches: 4, Indels: 0
        0.88            0.12        0.00

Matches are distributed among these distances:
  36   30  1.00

ACGTcount: A:0.60, C:0.07, G:0.10, T:0.23


Consensus pattern (36 bp):   
AGAAATATGATAACCAAAATCACAAAAAATGTAATA
Done.