Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01013946.1 Corchorus olitorius cultivar O-4 contig13979, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5870
ACGTcount: A:0.35, C:0.19, G:0.14, T:0.31


Found at i:3209 original size:17 final size:19

Alignment explanation


    Indices: 3175--3209  Score: 56
    Period size: 19  Copynumber: 1.9  Consensus size: 19

       3165 TCAATTCAAC

                               
       3175 ATCAAAACCAGTATCAAAT
          1 ATCAAAACCAGTATCAAAT

                              
       3194 ATCAAAA-CAG-ATCAAA
          1 ATCAAAACCAGTATCAAA

       3210 CCATGCAACA


Statistics
Matches: 16,  Mismatches: 0, Indels: 2
        0.89            0.00        0.11

Matches are distributed among these distances:
  17    6  0.38
  18    3  0.19
  19    7  0.44

ACGTcount: A:0.57, C:0.20, G:0.06, T:0.17


Consensus pattern (19 bp):   
ATCAAAACCAGTATCAAAT
Done.