Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01013949.1 Corchorus olitorius cultivar O-4 contig13982, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  16311

Tables:   1   

This is table  1  of  1  ( 11 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3386--3433
24
2.0
25
87
4
71
72
4
6
16
1.20
5800--5861
30
2.1
31
87
6
92
43
9
24
22
1.83
7611--9914
878
2.6
878
92
2
3800
36
25
11
26
1.90
11225--11274
24
2.0
25
84
3
66
44
2
6
48
1.39
12201--12244
14
2.9
15
80
10
54
40
11
11
36
1.77
12530--12558
2
15.0
2
92
7
51
0
48
0
51
1.00
15665--15826
60
2.7
60
87
0
225
33
19
19
27
1.96
15661--15826
31
5.5
30
69
11
97
33
19
19
27
1.96
15865--15958
31
3.1
31
69
16
88
28
17
20
34
1.95
15868--16028
60
2.7
60
87
1
234
26
18
19
36
1.94
16284--16311
2
14.0
2
100
0
56
50
0
0
50
1.00

Tables:   1

The End!