Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01001395.1 Corchorus olitorius cultivar O-4 contig01395, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3266
ACGTcount: A:0.32, C:0.23, G:0.17, T:0.28


Found at i:283 original size:35 final size:35

Alignment explanation


    Indices: 237--311  Score: 134
    Period size: 35  Copynumber: 2.1  Consensus size: 35

        227 TTATATAAAC

                                                
        237 GAACACTTAAATGAACAATAAACGA-GCATGTTCGT
          1 GAACACTTAAATGAACAATAAACGAGGC-TGTTCGT

                                               
        272 GAACACTTAAATGAACAATAAACGAGGCTGTTCGT
          1 GAACACTTAAATGAACAATAAACGAGGCTGTTCGT

                 
        307 GAACA
          1 GAACA

        312 TAAACGAACT


Statistics
Matches: 39,  Mismatches: 0, Indels: 2
        0.95            0.00        0.05

Matches are distributed among these distances:
  35   37  0.95
  36    2  0.05

ACGTcount: A:0.43, C:0.17, G:0.19, T:0.21


Consensus pattern (35 bp):   
GAACACTTAAATGAACAATAAACGAGGCTGTTCGT
Done.