Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01013951.1 Corchorus olitorius cultivar O-4 contig13984, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  32163

Tables:   1   

This is table  1  of  1  ( 12 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
8146--8220
29
2.6
28
70
6
78
26
21
14
37
1.92
9153--9193
21
2.0
21
95
0
73
31
4
21
41
1.74
9512--9536
1
25.0
1
100
0
50
100
0
0
0
0.00
11217--11241
6
4.2
6
100
0
50
16
52
16
16
1.76
19078--19124
22
2.1
22
84
7
60
61
2
12
23
1.42
19001--19185
93
2.0
93
90
0
289
50
2
12
34
1.54
20404--20473
5
15.2
5
77
16
80
57
0
21
21
1.41
20404--20466
18
3.8
18
80
20
91
57
0
20
22
1.41
20410--20460
26
2.0
26
96
0
93
56
0
19
23
1.42
28786--28899
57
2.0
57
84
5
149
32
14
20
32
1.93
30837--30917
39
2.0
40
90
2
128
38
3
7
50
1.48
31529--31569
21
2.0
21
85
0
55
39
14
17
29
1.89

Tables:   1

The End!