Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01013952.1 Corchorus olitorius cultivar O-4 contig13985, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  28732

Tables:   1   

This is table  1  of  1  ( 38 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
714--743
14
2.1
14
93
0
51
46
0
0
53
1.00
853--1044
105
1.9
102
86
3
276
34
11
2
52
1.49
1934--1975
22
1.9
22
85
0
57
14
21
26
38
1.91
2062--2092
11
2.8
11
100
0
62
19
6
0
74
1.03
3717--3754
19
2.1
19
95
5
69
7
0
86
5
0.69
3984--4051
25
2.7
25
86
4
84
14
13
19
52
1.73
3994--4117
29
4.4
28
77
12
119
15
13
13
57
1.66
3995--4117
61
2.1
58
86
7
167
15
13
13
56
1.67
5858--5911
24
2.3
24
84
6
67
20
12
3
62
1.45
6135--6177
20
2.2
20
86
0
59
2
53
9
34
1.46
9271--9320
25
2.0
25
96
0
91
42
12
2
44
1.53
16877--17060
70
2.6
70
82
1
208
21
19
21
38
1.94
17457--17556
45
2.3
44
86
8
141
44
20
6
30
1.75
18283--18328
22
2.0
23
84
12
60
58
13
0
28
1.35
19372--19404
16
2.1
16
100
0
66
12
21
24
42
1.86
19890--19971
22
3.7
23
78
15
77
36
10
13
39
1.80
19983--20145
86
1.9
83
91
6
265
31
16
8
43
1.78
19914--20253
22
15.5
22
71
14
161
33
15
9
41
1.79
20200--20284
42
2.0
42
81
4
100
34
16
8
41
1.78
20366--20482
22
5.3
22
77
6
112
31
14
9
44
1.77
20332--20505
22
7.9
22
74
2
98
33
13
10
41
1.79
20340--20500
88
1.8
88
82
2
207
33
13
10
42
1.78
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
20622--20769
22
6.8
21
74
13
86
36
20
8
33
1.84
20625--20769
66
2.2
66
77
11
154
36
20
8
33
1.84
20624--20769
44
3.3
44
75
11
129
36
20
8
34
1.84
20794--21011
22
9.8
22
71
10
140
37
18
9
34
1.83
20776--21007
44
5.2
45
72
12
158
37
17
9
36
1.81
20780--21011
66
3.5
67
82
4
247
37
18
8
35
1.81
21576--21607
6
5.5
6
92
7
57
50
0
15
34
1.45
22235--22306
22
3.4
20
76
14
65
44
11
6
37
1.67
22323--22900
22
26.3
22
67
11
245
37
17
8
36
1.80
22518--22710
107
1.8
107
82
10
252
36
18
7
37
1.79
22955--23095
22
6.5
22
75
4
108
34
16
11
37
1.84
22335--23457
44
25.5
43
69
12
371
36
18
9
36
1.82
22335--23455
66
17.0
66
67
11
359
36
17
9
36
1.82
23107--23524
22
19.1
22
73
8
225
36
18
9
35
1.84
24572--24628
27
2.1
27
84
15
73
45
1
8
43
1.45
24679--24722
2
21.5
2
95
4
79
47
0
2
50
1.13

Tables:   1

The End!