genome.fa.s13953.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01013953.1 Corchorus olitorius cultivar O-4 contig13986, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  74578

Tables:   1   

This is table  1  of  1  ( 29 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
596--730	72	1.9	73	90	3	220	23	25	16	34	1.95
4309--4373	31	2.2	31	83	5	80	35	12	23	29	1.91
10943--11067	29	4.3	29	78	13	141	49	14	15	20	1.79
10961--11064	29	3.6	30	82	11	144	50	13	13	22	1.76
10943--11067	58	2.2	58	98	0	241	49	14	15	20	1.79
10961--11083	29	4.2	29	80	10	133	50	13	13	22	1.76
11203--11282	31	2.6	31	87	0	115	40	10	8	41	1.70
11349--11405	18	3.1	19	80	12	64	40	0	7	52	1.28
12107--12186	31	2.6	31	87	0	115	42	10	13	33	1.78
12295--12361	31	2.2	31	84	5	84	20	16	13	49	1.79
12620--12685	22	3.0	22	84	2	87	21	10	39	28	1.86
14105--14157	17	3.2	17	82	12	56	22	22	18	35	1.95
24178--24232	30	2.0	28	82	13	69	54	3	16	25	1.58
31508--31738	76	3.0	76	89	0	354	32	28	18	21	1.97
37972--38022	19	2.7	19	77	14	61	50	1	0	47	1.12
39915--39965	22	2.3	22	83	6	59	43	9	7	39	1.67
43370--43419	22	2.3	22	92	0	82	0	26	42	32	1.56
52223--52258	19	1.9	18	88	5	54	33	22	2	41	1.68
52223--52269	11	4.7	10	80	17	53	31	21	6	40	1.78
57536--57923	193	2.0	193	97	1	742	36	14	17	32	1.89
58906--58962	17	3.3	17	73	11	53	24	10	8	56	1.61
59308--60468	580	2.0	575	88	5	1721	32	16	19	32	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62136--62196	28	2.2	28	94	2	106	57	22	16	3	1.54
62732--62782	25	2.2	24	80	13	61	27	0	13	58	1.36
63809--63842	17	2.0	17	88	0	50	17	5	14	61	1.52
67508--67543	2	18.0	2	88	0	54	50	0	5	44	1.25
67508--67543	12	3.0	12	95	0	63	50	0	5	44	1.25
70385--70409	2	12.5	2	100	0	50	52	0	0	48	1.00
70633--70729	46	2.1	46	92	0	158	30	16	11	41	1.84

Tables:   1

The End!