Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01013954.1 Corchorus olitorius cultivar O-4 contig13987, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2240
ACGTcount: A:0.30, C:0.16, G:0.18, T:0.37


Found at i:177 original size:2 final size:2

Alignment explanation


    Indices: 166--252  Score: 65
    Period size: 2  Copynumber: 45.0  Consensus size: 2

        156 ACCAACCGTT

                                                      *                   
        166 TA TA TA -A TA TA TA TA TA TA TA TA TA TA AA TA TA TA -A TA TA
          1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA

                *         *                 *  *       *        *          
        206 TCA GA TA TA TT TA TA TA -A T- TC TT TA TA CA TA TA AA TA TA TA
          1 T-A TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA

             *      
        247 TT TA TA
          1 TA TA TA

        253 ATAATTTATA


Statistics
Matches: 66,  Mismatches: 14, Indels: 10
        0.73            0.16        0.11

Matches are distributed among these distances:
   1    4  0.06
   2   61  0.92
   3    1  0.02

ACGTcount: A:0.48, C:0.03, G:0.01, T:0.47


Consensus pattern (2 bp):   
TA

Done.