Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01013959.1 Corchorus olitorius cultivar O-4 contig13992, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 18314
ACGTcount: A:0.32, C:0.22, G:0.17, T:0.30


Found at i:5221 original size:22 final size:22

Alignment explanation


    Indices: 5196--5248  Score: 63
    Period size: 22  Copynumber: 2.4  Consensus size: 22

       5186 AAATCAAACT

                       **          
       5196 AACAATTAAGACTATCT-AAGAA
          1 AACAATTAAGAAAAT-TAAAGAA

                  *               
       5218 AACAATCAAGAAAATTAAAGAA
          1 AACAATTAAGAAAATTAAAGAA

                     
       5240 AACAATTAA
          1 AACAATTAA

       5249 TCAGAAAGCA


Statistics
Matches: 26,  Mismatches: 4, Indels: 2
        0.81            0.12        0.06

Matches are distributed among these distances:
  21    1  0.04
  22   25  0.96

ACGTcount: A:0.62, C:0.11, G:0.08, T:0.19


Consensus pattern (22 bp):   
AACAATTAAGAAAATTAAAGAA
Done.