Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01013964.1 Corchorus olitorius cultivar O-4 contig13997, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2103
ACGTcount: A:0.32, C:0.17, G:0.21, T:0.30


Found at i:1498 original size:8 final size:9

Alignment explanation


    Indices: 1462--1499  Score: 69
    Period size: 9  Copynumber: 4.3  Consensus size: 9

       1452 CCCAAATTAC

                     
       1462 TTATGGAAA
          1 TTATGGAAA

                     
       1471 TTATGGAAA
          1 TTATGGAAA

                     
       1480 TTATGGAAA
          1 TTATGGAAA

                     
       1489 TTAT-GAAA
          1 TTATGGAAA

               
       1497 TTA
          1 TTA

       1500 AATGAATTAA


Statistics
Matches: 29,  Mismatches: 0, Indels: 1
        0.97            0.00        0.03

Matches are distributed among these distances:
   8    7  0.24
   9   22  0.76

ACGTcount: A:0.45, C:0.00, G:0.18, T:0.37


Consensus pattern (9 bp):   
TTATGGAAA
Done.