Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01013967.1 Corchorus olitorius cultivar O-4 contig14000, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  45853

Tables:   1   

This is table  1  of  1  ( 20 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1998--2044
23
2.0
23
100
0
94
17
4
21
57
1.56
3213--3251
2
19.5
2
100
0
78
51
0
0
48
1.00
5826--5862
6
6.0
6
87
6
56
32
2
64
0
1.07
6569--6649
42
1.9
42
94
0
144
28
20
1
49
1.57
7541--7624
31
2.7
31
88
0
123
38
26
17
17
1.92
7722--7792
28
2.4
31
79
13
78
50
7
23
18
1.71
8013--8154
74
1.9
75
85
1
196
22
22
19
35
1.95
11123--11157
18
2.0
17
88
5
52
60
2
2
34
1.26
11521--11553
2
17.0
2
87
6
50
48
0
0
51
1.00
24004--24036
16
2.1
16
94
0
57
24
6
21
48
1.72
24095--24146
27
1.9
27
92
0
86
26
3
26
42
1.73
24121--24169
19
2.6
19
86
0
80
24
4
28
42
1.73
32679--32712
2
17.0
2
100
0
68
50
0
0
50
1.00
35868--36339
234
2.0
234
97
0
890
30
20
16
32
1.94
39007--39042
18
1.9
18
88
5
54
41
8
11
38
1.71
39504--39546
2
22.5
2
90
9
72
48
0
0
51
1.00
40942--41001
2
30.5
2
79
3
59
50
6
0
43
1.28
41959--42061
3
34.3
3
91
3
154
62
0
0
35
1.09
44109--44133
6
4.2
6
100
0
50
84
0
16
0
0.63
45670--45706
14
2.7
14
84
16
51
48
0
2
48
1.15

Tables:   1

The End!