Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01013973.1 Corchorus olitorius cultivar O-4 contig14006, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  10098

Tables:   1   

This is table  1  of  1  ( 9 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
886--927
21
2.0
21
85
0
57
42
23
33
0
1.55
2948--3007
30
2.0
30
83
0
75
31
40
5
23
1.76
9285--9619
32
10.6
32
83
8
400
21
25
15
37
1.92
9280--9563
63
4.4
65
85
7
402
21
26
14
37
1.92
9271--9619
97
3.6
95
88
5
465
21
25
15
37
1.93
9440--9644
60
3.4
60
79
9
220
21
25
15
37
1.92
9537--9588
27
1.9
27
88
0
77
21
26
15
36
1.93
9598--9650
25
2.1
25
92
0
88
16
24
16
41
1.89
9918--9960
17
2.5
17
81
7
52
20
30
4
44
1.72

Tables:   1

The End!