Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01013977.1 Corchorus olitorius cultivar O-4 contig14010, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 12575
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.34


Found at i:1050 original size:35 final size:35

Alignment explanation


    Indices: 985--1051  Score: 98
    Period size: 35  Copynumber: 1.9  Consensus size: 35

        975 TTTTCAGATT

                               **              
        985 AAACTATACATCAATGATCTTTGACCAAAAAAAAA
          1 AAACTATACATCAATGATCAATGACCAAAAAAAAA

                                   * *      
       1020 AAACTATACATCAATGATCAATGGCTAAAAAA
          1 AAACTATACATCAATGATCAATGACCAAAAAA

       1052 GTAATAATGA


Statistics
Matches: 28,  Mismatches: 4, Indels: 0
        0.88            0.12        0.00

Matches are distributed among these distances:
  35   28  1.00

ACGTcount: A:0.54, C:0.16, G:0.07, T:0.22


Consensus pattern (35 bp):   
AAACTATACATCAATGATCAATGACCAAAAAAAAA

Found at i:9032 original size:2 final size:2

Alignment explanation


    Indices: 9025--9057  Score: 66
    Period size: 2  Copynumber: 16.5  Consensus size: 2

       9015 ACTATTACCA

                                                             
       9025 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC T
          1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC T

       9058 TTCCTAAGTA


Statistics
Matches: 31,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   2   31  1.00

ACGTcount: A:0.00, C:0.48, G:0.00, T:0.52


Consensus pattern (2 bp):   
TC

Done.