Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01001398.1 Corchorus olitorius cultivar O-4 contig01398, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 753

Length: 1256
ACGTcount: A:0.38, C:0.13, G:0.19, T:0.29


Found at i:229 original size:59 final size:57

Alignment explanation


    Indices: 110--264  Score: 233
    Period size: 58  Copynumber: 2.7  Consensus size: 57

        100 GCTGATATGG

                              *          **                  *       
        110 TCATGTATAAAATATGGGGGATAG--AAATTAAAAAAGAGAGTTATGGTCAGGAATC
          1 TCATGTATAAAATATGGGAGATAGAAAAAAAAAAAAAGAGAGTTATGGTAAGGAATC

                                                                       
        165 TCATGTAATAAAATATGGGAGATAGAAAAAAAAAAAAGAGAGAGTTATGGTAAGGAATC
          1 TCATGT-ATAAAATATGGGAGATAGAAAAAAAAAAAA-AGAGAGTTATGGTAAGGAATC

                  *                                  
        224 TCATGTCTAAAATATGGGAGATAGAAAAAAAAAAAAAGAGA
          1 TCATGTATAAAATATGGGAGATAGAAAAAAAAAAAAAGAGA

        265 AAAGAAAAAC


Statistics
Matches: 91,  Mismatches: 5, Indels: 6
        0.89            0.05        0.06

Matches are distributed among these distances:
  55    6  0.07
  56   17  0.19
  57    5  0.05
  58   37  0.41
  59   26  0.29

ACGTcount: A:0.51, C:0.05, G:0.23, T:0.21


Consensus pattern (57 bp):   
TCATGTATAAAATATGGGAGATAGAAAAAAAAAAAAAGAGAGTTATGGTAAGGAATC
Done.