Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01013988.1 Corchorus olitorius cultivar O-4 contig14021, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  43058

Tables:   1   

This is table  1  of  1  ( 21 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
17--110
32
3.0
32
90
4
147
30
13
10
44
1.78
20--115
31
3.1
31
91
5
142
33
13
10
42
1.78
5802--6438
318
2.0
318
100
0
1274
36
14
12
36
1.84
6630--7213
293
2.0
293
88
1
866
44
15
14
25
1.85
7216--7240
12
2.1
12
100
0
50
68
8
0
24
1.16
12254--12345
21
4.4
21
94
2
134
27
26
18
28
1.98
16489--16601
21
5.4
21
89
2
149
29
25
17
27
1.98
18916--19036
32
3.8
32
93
1
199
38
33
4
23
1.76
22970--23082
32
3.5
32
93
0
199
34
35
4
25
1.76
29842--29900
21
2.8
21
86
0
91
54
18
10
16
1.70
35161--35965
108
7.5
108
88
3
1092
34
21
15
28
1.94
35200--35965
54
14.2
55
86
6
975
34
21
15
28
1.94
35200--35965
161
4.7
161
88
3
1110
34
21
15
28
1.94
38360--38400
21
2.0
21
90
0
64
21
29
21
26
1.99
38432--38475
22
2.0
22
86
0
61
22
22
25
29
1.99
38426--38530
52
2.0
52
94
0
183
23
23
27
24
2.00
39073--39119
26
1.9
23
87
12
67
27
27
4
40
1.75
40666--40828
66
2.5
66
93
0
281
26
9
21
42
1.82
40666--40879
33
6.5
32
77
7
171
27
9
21
42
1.83
40666--40876
66
3.2
66
86
4
212
27
9
20
42
1.83
42925--42965
21
2.0
21
90
0
64
21
29
21
26
1.99

Tables:   1

The End!