Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01001399.1 Corchorus olitorius cultivar O-4 contig01399, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 616

Length: 1027
ACGTcount: A:0.34, C:0.19, G:0.18, T:0.29


Found at i:402 original size:5 final size:5

Alignment explanation


    Indices: 392--420  Score: 58
    Period size: 5  Copynumber: 5.8  Consensus size: 5

        382 ATAAAAATAA

                                              
        392 TAAAC TAAAC TAAAC TAAAC TAAAC TAAA
          1 TAAAC TAAAC TAAAC TAAAC TAAAC TAAA

        421 AGAAAAGTAG


Statistics
Matches: 24,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   5   24  1.00

ACGTcount: A:0.62, C:0.17, G:0.00, T:0.21


Consensus pattern (5 bp):   
TAAAC

Done.