Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01013990.1 Corchorus olitorius cultivar O-4 contig14023, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  42133

Tables:   1   

This is table  1  of  1  ( 17 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3529--3584
27
2.0
28
89
6
87
42
10
5
41
1.62
3559--3677
63
1.9
63
84
3
159
47
12
5
34
1.66
4014--4053
15
2.6
16
88
4
55
62
12
10
15
1.54
9259--9303
21
2.1
22
84
12
58
20
8
8
62
1.51
9253--9304
21
2.5
20
79
17
52
23
7
9
59
1.54
12048--12078
16
1.9
16
93
0
53
19
6
12
61
1.53
18759--18852
45
2.2
42
86
7
136
35
6
21
37
1.79
24107--24140
8
4.1
8
88
7
50
82
11
0
5
0.83
24492--24525
8
4.5
8
92
7
54
79
11
8
0
0.94
24488--24525
15
2.6
15
84
15
53
78
13
7
0
0.94
28622--29222
47
12.6
46
80
11
593
47
5
18
28
1.71
29223--29287
30
2.2
30
91
5
105
36
7
18
36
1.80
29263--29786
47
10.9
47
81
9
533
47
5
17
29
1.70
28695--29863
563
2.1
564
94
0
2063
46
5
18
29
1.71
28653--29821
100
12.3
96
79
11
1020
46
5
18
29
1.72
33933--34020
36
2.4
36
98
0
167
38
13
12
35
1.83
38810--38930
65
1.9
63
81
6
145
24
29
23
21
1.99

Tables:   1

The End!