genome.fa.s13999.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01013999.1 Corchorus olitorius cultivar O-4 contig14032, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  163947

Tables:   1   

This is table  1  of  1  ( 75 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3686--3714	14	2.1	14	100	0	58	27	0	51	20	1.47
14087--14124	18	2.1	18	100	0	76	42	10	21	26	1.85
16502--16547	23	2.0	23	86	0	65	50	0	10	39	1.38
16624--16651	2	14.0	2	100	0	56	50	0	0	50	1.00
16914--16939	12	2.2	12	100	0	52	42	0	15	42	1.47
17846--17945	22	4.5	22	78	2	85	43	15	7	35	1.73
17912--17962	22	2.3	22	89	0	75	39	17	7	35	1.79
17973--18029	22	2.6	22	73	13	55	36	21	7	35	1.80
18039--18189	22	7.0	22	78	4	146	35	13	12	38	1.83
18058--18141	41	2.0	41	88	4	125	38	10	14	36	1.81
18039--18189	63	2.3	64	82	5	162	35	13	12	38	1.83
19038--19263	120	1.9	119	87	2	337	36	14	19	29	1.92
19267--19428	83	2.0	83	87	2	236	36	23	13	26	1.92
19911--19947	19	1.9	19	100	0	74	16	27	13	43	1.85
19998--20055	21	2.9	20	79	5	64	27	20	13	37	1.91
21105--21169	33	2.0	33	96	0	121	36	29	15	18	1.91
22066--22554	123	4.0	122	84	5	589	29	30	29	11	1.92
22066--22554	239	2.0	242	83	5	614	29	30	29	11	1.92
22978--23298	21	15.5	21	70	9	122	42	23	19	14	1.87
23185--23239	20	2.7	20	75	13	58	36	23	27	12	1.91
23426--23497	25	2.9	25	82	0	90	31	30	27	9	1.89
23419--23509	25	3.6	25	78	0	83	31	26	30	10	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23328--23558	123	1.9	123	81	1	284	33	25	29	12	1.92
23525--23707	61	3.0	61	84	0	240	31	26	28	13	1.93
23662--23717	25	2.2	25	87	0	76	33	30	28	7	1.84
23701--23827	25	5.2	25	65	11	64	29	25	31	12	1.93
23712--23863	48	3.1	48	68	14	139	32	23	31	12	1.92
23647--23900	98	2.6	98	92	1	411	32	25	30	12	1.92
25124--25150	3	9.0	3	100	0	54	66	33	0	0	0.92
26284--26385	51	2.0	51	98	0	195	32	33	13	20	1.92
28741--28789	6	8.2	6	100	0	98	51	0	16	32	1.45
35614--35666	25	2.1	25	100	0	106	22	20	16	39	1.92
42085--42125	21	2.0	21	85	9	57	73	2	12	12	1.20
56709--56744	2	18.0	2	100	0	72	50	0	0	50	1.00
56868--56910	22	2.0	21	86	13	61	9	6	4	79	1.06
57052--57078	13	2.1	13	100	0	54	44	0	0	55	0.99
57152--57240	43	2.0	43	82	6	108	48	11	17	22	1.79
58128--58156	2	14.5	2	100	0	58	48	0	0	51	1.00
59297--59384	46	1.9	46	88	0	131	26	12	15	45	1.82
59849--59938	18	5.0	18	84	12	114	27	27	11	33	1.91
59850--59938	36	2.5	35	89	7	126	28	28	11	32	1.91
68434--68534	50	2.0	50	98	0	193	28	18	22	29	1.98
68843--69007	84	2.0	84	88	0	249	26	28	13	32	1.94
70657--70746	18	5.0	18	81	12	105	26	27	11	34	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
70658--70746	36	2.5	36	83	10	119	26	28	11	33	1.91
71350--71433	43	2.0	43	88	4	125	42	4	27	25	1.74
74806--74841	17	2.1	17	100	0	72	50	19	5	25	1.69
78421--78450	14	2.1	14	93	0	51	90	0	10	0	0.47
79067--79240	87	2.0	87	87	6	255	46	7	11	34	1.68
79341--79437	51	2.0	49	84	13	130	37	18	35	9	1.83
89260--89295	12	3.0	12	91	0	54	11	2	11	75	1.16
94210--94428	120	1.8	120	89	3	343	51	1	11	35	1.47
94715--94866	22	6.9	22	75	10	89	38	12	9	39	1.75
94780--94883	22	4.7	22	73	11	70	34	15	10	39	1.82
95687--95728	2	22.5	2	86	13	63	52	0	0	47	1.00
102138--102564	40	11.2	39	79	8	380	38	12	19	29	1.88
102613--103154	142	3.9	142	93	3	881	33	16	19	30	1.94
102613--103154	283	1.9	275	90	4	863	33	16	19	30	1.94
104426--104481	1	56.0	1	78	0	58	1	1	7	89	0.63
104418--104482	9	6.9	9	80	15	69	1	3	9	86	0.75
104418--104481	19	3.3	19	85	12	85	1	3	7	87	0.71
104418--104481	30	2.1	30	91	0	101	1	3	7	87	0.71
114499--114525	13	2.1	13	100	0	54	22	22	22	33	1.97
117824--117907	31	2.7	31	85	5	109	22	19	9	48	1.77
118004--118032	13	2.1	14	93	6	51	37	6	6	48	1.57
130734--130852	27	4.4	27	87	2	157	37	27	17	16	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
130734--130853	55	2.2	54	84	1	159	38	27	17	16	1.91
131651--131711	27	2.3	26	83	16	72	49	1	4	44	1.33
131779--131836	2	28.5	2	78	16	57	43	3	1	51	1.28
132000--132076	38	2.0	39	94	2	138	46	11	6	35	1.66
143530--143598	29	2.3	30	83	11	81	49	20	5	24	1.71
160967--161095	50	2.6	50	82	4	145	24	30	12	32	1.92
161071--161127	27	2.1	27	86	0	78	33	24	8	33	1.86
161103--161241	46	2.9	49	83	8	185	23	30	9	36	1.86
161100--161250	50	3.1	49	83	7	200	23	29	10	37	1.88

Tables:   1

The End!