Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01014004.1 Corchorus olitorius cultivar O-4 contig14037, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 956

Length: 1594
ACGTcount: A:0.35, C:0.22, G:0.16, T:0.28


Found at i:872 original size:75 final size:75

Alignment explanation


    Indices: 781--949  Score: 315
    Period size: 75  Copynumber: 2.3  Consensus size: 75

        771 AGGTTCAACT

                                                                             
        781 CGCGCGCGGGTTACTCCAGGCTTCTTTTAGTTCATGCAAATTTGGTGACTCGCGCGCGTCCACGG
          1 CGCGCGCGGGTTACTCCAGGCTTCTTTTAGTTCATGCAAATTTGGTGACTCGCGCGCGTCCACGG

                      
        846 TTCGACCAGG
         66 TTCGACCAGG

                                                                             
        856 CGCGCGCGGGTTACTCCAGGCTTCTTTTAGTTCATGCAAATTTGGTGACTCGCGCGCGTCCACGG
          1 CGCGCGCGGGTTACTCCAGGCTTCTTTTAGTTCATGCAAATTTGGTGACTCGCGCGCGTCCACGG

                      
        921 TTCGACCAGG
         66 TTCGACCAGG

                    *            
        931 CGCG-G-GTGTTACTCCAGGC
          1 CGCGCGCGGGTTACTCCAGGC

        950 ATCCCTTTGC


Statistics
Matches: 93,  Mismatches: 1, Indels: 2
        0.97            0.01        0.02

Matches are distributed among these distances:
  73   13  0.14
  74    1  0.01
  75   79  0.85

ACGTcount: A:0.14, C:0.30, G:0.30, T:0.26


Consensus pattern (75 bp):   
CGCGCGCGGGTTACTCCAGGCTTCTTTTAGTTCATGCAAATTTGGTGACTCGCGCGCGTCCACGG
TTCGACCAGG
Done.