Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01014005.1 Corchorus olitorius cultivar O-4 contig14038, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4567
ACGTcount: A:0.36, C:0.19, G:0.18, T:0.27


Found at i:2338 original size:90 final size:90

Alignment explanation


    Indices: 2185--2361  Score: 345
    Period size: 90  Copynumber: 2.0  Consensus size: 90

       2175 AATGATATCC

                                                                             
       2185 AACTCTAGAAATTCTTAGCCAAAAACCAAAACCAATTTTGAAAATTTGGAATAGAACTCTTAACA
          1 AACTCTAGAAATTCTTAGCCAAAAACCAAAACCAATTTTGAAAATTTGGAATAGAACTCTTAACA

                                     
       2250 AAATGCCTAAATGCAAAATCTGTAA
         66 AAATGCCTAAATGCAAAATCTGTAA

                                                                             
       2275 AACTCTAGAAATTCTTAGCCAAAAACCAAAACCAATTTTGAAAATTTGGAATAGAACTCTTAACA
          1 AACTCTAGAAATTCTTAGCCAAAAACCAAAACCAATTTTGAAAATTTGGAATAGAACTCTTAACA

                 *                
       2340 AAATGGCTAAATGCAAAATCTG
         66 AAATGCCTAAATGCAAAATCTG

       2362 CAGAAATACA


Statistics
Matches: 86,  Mismatches: 1, Indels: 0
        0.99            0.01        0.00

Matches are distributed among these distances:
  90   86  1.00

ACGTcount: A:0.46, C:0.18, G:0.11, T:0.25


Consensus pattern (90 bp):   
AACTCTAGAAATTCTTAGCCAAAAACCAAAACCAATTTTGAAAATTTGGAATAGAACTCTTAACA
AAATGCCTAAATGCAAAATCTGTAA
Done.