Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01014007.1 Corchorus olitorius cultivar O-4 contig14040, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  34527

Tables:   1   

This is table  1  of  1  ( 11 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1138--1216
6
13.5
6
77
10
56
2
20
0
77
0.89
1107--1198
12
7.7
12
76
10
55
7
15
0
77
0.98
1102--1208
15
6.9
15
73
19
76
6
16
0
76
0.98
1133--1219
18
5.0
17
76
14
79
3
20
0
75
0.94
8118--8145
13
2.2
13
100
0
56
46
0
25
28
1.53
10422--10492
35
2.0
35
83
0
88
28
11
23
36
1.89
23589--23772
73
2.5
73
100
0
368
52
5
15
25
1.65
23724--23779
27
2.1
27
82
0
67
51
7
17
23
1.70
25725--25764
22
1.9
21
85
10
55
42
20
12
25
1.86
31316--31371
18
3.1
18
100
0
112
33
28
10
26
1.90
31538--31630
42
2.2
42
90
1
141
34
31
13
20
1.92

Tables:   1

The End!