Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01001401.1 Corchorus olitorius cultivar O-4 contig01401, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 703

Length: 1172
ACGTcount: A:0.28, C:0.24, G:0.23, T:0.26


Found at i:81 original size:19 final size:20

Alignment explanation


    Indices: 57--105  Score: 59
    Period size: 19  Copynumber: 2.6  Consensus size: 20

         47 TGCATAGAAA

                             *  
         57 TTGAAATTTTTCGAAT-TTT
          1 TTGAAATTTTTCGAATAATT

                  *             
         76 TTGAAAATTTT-GAATAATT
          1 TTGAAATTTTTCGAATAATT

                        
         95 TTG-AATTTTTC
          1 TTGAAATTTTTC

        106 ATGCATATAT


Statistics
Matches: 25,  Mismatches: 3, Indels: 4
        0.78            0.09        0.12

Matches are distributed among these distances:
  18   10  0.40
  19   15  0.60

ACGTcount: A:0.31, C:0.04, G:0.10, T:0.55


Consensus pattern (20 bp):   
TTGAAATTTTTCGAATAATT
Done.