Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01014010.1 Corchorus olitorius cultivar O-4 contig14043, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  37581

Tables:   1   

This is table  1  of  1  ( 12 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4643--4726
31
2.8
30
82
7
107
22
15
8
53
1.68
7134--7165
2
16.0
2
93
0
55
3
0
46
50
1.17
9148--9214
27
2.5
27
92
0
107
40
28
16
14
1.88
9512--9710
50
4.0
50
92
2
328
23
29
12
34
1.91
10393--10426
2
17.0
2
100
0
68
50
0
0
50
1.00
16768--16793
11
2.4
11
100
0
52
34
11
26
26
1.91
20780--20810
14
2.2
14
94
0
53
0
32
0
67
0.91
20819--20845
3
9.0
3
100
0
54
0
33
0
66
0.92
34864--34939
22
3.5
21
74
16
75
5
27
39
27
1.78
34864--34955
43
2.1
43
84
7
116
6
27
41
25
1.79
35155--35185
16
2.0
15
93
6
53
70
0
3
25
1.02
35959--37581
40
40.7
40
87
2
1997
31
19
28
20
1.97

Tables:   1

The End!