Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01014014.1 Corchorus olitorius cultivar O-4 contig14047, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  33967

Tables:   1   

This is table  1  of  1  ( 10 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
105--171
26
2.5
26
88
11
93
41
5
16
35
1.73
3320--3368
21
2.3
21
82
0
62
16
38
22
22
1.92
4684--4743
26
2.3
28
83
16
76
53
0
13
33
1.40
4684--4752
26
2.7
26
80
14
72
55
0
11
33
1.36
10247--10387
31
4.5
31
83
0
174
31
24
25
19
1.98
20570--20631
21
3.0
21
92
0
97
30
14
27
27
1.95
21987--22027
21
2.0
21
90
0
64
36
7
26
29
1.83
27007--27068
21
3.0
21
92
0
106
30
14
24
30
1.95
28374--28434
25
2.4
24
81
5
68
27
13
11
47
1.77
31365--31390
2
13.0
2
100
0
52
50
0
0
50
1.00

Tables:   1

The End!