Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01014015.1 Corchorus olitorius cultivar O-4 contig14048, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  48625

Tables:   1   

This is table  1  of  1  ( 17 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2294--2334
21
2.0
20
90
4
64
56
12
17
14
1.68
5435--5482
24
2.0
25
87
4
71
16
6
4
72
1.20
5884--5913
15
2.1
15
93
6
53
66
6
13
13
1.43
10474--10554
30
2.6
31
69
15
76
40
24
14
19
1.90
13743--13784
15
2.7
15
88
3
57
9
11
14
64
1.50
19933--20063
46
2.9
45
74
5
113
28
24
12
34
1.92
29246--29548
30
10.0
30
90
1
444
31
17
18
32
1.95
29255--29616
90
3.9
90
85
3
463
31
16
18
33
1.93
29255--29617
30
11.8
32
86
3
193
31
16
18
33
1.93
29281--29613
60
5.4
62
90
1
309
31
16
18
33
1.93
34670--34719
18
2.8
18
84
0
73
52
0
8
40
1.31
36152--36182
14
2.2
14
100
0
62
0
12
0
87
0.55
37519--37574
27
2.0
27
82
6
67
51
3
19
25
1.62
41821--41873
27
2.0
27
92
0
88
45
22
15
16
1.85
42035--42101
31
2.2
31
86
5
93
20
19
11
47
1.81
42461--42539
30
2.6
31
91
4
133
34
11
20
34
1.88
45858--45916
30
2.0
30
83
6
75
67
1
6
23
1.24

Tables:   1

The End!