Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01014016.1 Corchorus olitorius cultivar O-4 contig14049, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  7957

Tables:   1   

This is table  1  of  1  ( 14 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
908--984
28
2.8
28
86
2
111
41
23
14
20
1.89
1272--1348
23
3.2
23
63
20
57
19
28
14
37
1.91
1222--1461
50
4.8
50
95
0
408
24
27
11
35
1.90
1676--2045
64
5.8
64
84
2
456
26
20
17
36
1.94
1676--2045
128
2.9
126
85
3
506
26
20
17
36
1.94
2017--2311
121
2.4
122
89
1
441
27
25
11
35
1.90
2196--2386
67
2.9
67
88
4
287
26
24
10
38
1.88
4182--4229
12
4.2
11
94
2
78
25
2
16
56
1.51
4182--4229
5
8.3
6
77
22
50
25
2
16
56
1.51
4181--4229
23
2.1
24
96
3
91
24
2
16
57
1.50
4512--4560
14
3.6
14
83
5
66
38
20
2
38
1.64
4514--4587
14
5.4
13
84
7
60
39
17
4
39
1.69
4560--4588
15
1.9
15
100
0
58
37
13
6
41
1.72
7595--7637
22
2.0
22
86
9
61
6
11
9
72
1.29

Tables:   1

The End!