Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01014017.1 Corchorus olitorius cultivar O-4 contig14050, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  17599

Tables:   1   

This is table  1  of  1  ( 15 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
452--765
68
4.6
69
95
0
560
26
28
15
29
1.96
452--779
137
2.4
132
91
4
424
26
28
15
29
1.96
811--1364
167
3.3
168
90
3
854
28
21
16
33
1.95
1451--1563
38
3.0
38
82
7
140
19
11
20
48
1.79
1489--2109
30
20.3
30
80
7
542
20
12
20
46
1.82
1447--1567
39
3.2
39
80
8
149
19
11
19
50
1.77
1533--2110
60
9.6
60
83
4
673
20
12
20
46
1.83
1533--2110
90
6.4
89
85
5
689
20
12
20
46
1.83
2586--2661
28
2.8
28
91
2
118
14
13
27
44
1.82
5551--5591
21
1.9
22
90
5
66
24
24
7
43
1.79
7316--7346
14
2.1
15
94
5
55
70
6
9
12
1.31
7731--7781
24
2.0
26
82
17
63
19
33
9
37
1.85
8154--8188
17
1.9
17
88
11
52
37
11
22
28
1.89
9558--9599
15
2.7
15
96
3
75
11
7
14
66
1.43
13621--13984
199
1.8
199
91
2
597
35
15
19
29
1.93

Tables:   1

The End!