Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01014018.1 Corchorus olitorius cultivar O-4 contig14051, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  18382

Tables:   1   

This is table  1  of  1  ( 16 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
85--143
22
2.5
24
78
15
61
23
22
5
49
1.70
4310--4522
65
3.4
62
86
3
241
33
15
16
34
1.91
4305--4556
30
8.2
30
77
6
216
33
15
16
33
1.91
4312--4556
60
4.0
60
85
2
247
33
16
16
33
1.92
5704--5762
22
2.5
24
78
15
61
23
22
5
49
1.70
8768--8823
21
2.7
21
74
0
58
23
3
19
53
1.60
8962--9036
33
2.3
33
90
0
114
34
6
16
42
1.74
9140--9334
54
3.6
54
87
4
268
37
21
13
28
1.91
9089--9326
108
2.2
109
82
9
283
34
21
15
28
1.94
9441--9973
37
14.4
37
78
6
479
44
16
16
23
1.86
11044--11110
17
3.8
18
75
11
59
1
17
2
77
0.97
11481--11538
6
10.0
6
88
3
84
0
17
0
82
0.66
11476--11525
8
5.9
8
80
19
57
2
16
0
82
0.77
11507--11545
20
2.0
20
84
0
51
2
17
0
79
0.84
11488--11547
28
2.1
28
90
0
93
1
16
0
81
0.77
11765--11828
14
4.7
13
87
12
85
37
10
9
42
1.73

Tables:   1

The End!