genome.fa.s14019.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01014019.1 Corchorus olitorius cultivar O-4 contig14052, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  91879

Tables:   1   

This is table  1  of  1  ( 54 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
450--494	22	2.0	22	86	0	63	42	15	6	35	1.73
503--544	22	1.9	22	85	9	59	28	11	4	54	1.57
586--640	22	2.4	23	81	3	67	38	18	12	30	1.88
666--725	22	2.7	22	79	5	68	38	10	13	38	1.78
679--938	22	12.1	22	71	16	106	35	14	9	40	1.78
573--1725	44	27.0	44	67	16	321	35	16	9	38	1.82
690--957	66	4.2	64	74	12	237	34	14	10	41	1.79
1063--1229	22	7.6	22	73	8	83	34	13	10	41	1.79
1126--1230	22	4.8	23	75	10	87	37	10	9	42	1.72
1325--1387	22	2.9	22	92	4	101	31	28	9	30	1.89
1324--1406	22	3.8	22	82	6	87	32	24	9	33	1.88
1323--1448	22	5.7	22	78	10	69	33	22	9	34	1.86
1489--1541	22	2.3	23	83	6	63	39	15	7	37	1.75
1531--1729	22	9.0	22	73	11	167	36	17	10	35	1.84
1484--1725	66	3.6	68	78	8	223	36	16	9	36	1.83
1892--1930	20	2.0	20	85	10	53	64	2	5	28	1.28
6255--6284	15	2.0	15	100	0	60	40	13	0	46	1.43
6397--6438	19	2.3	18	84	8	57	61	0	4	33	1.17
6402--6438	19	2.0	19	89	5	58	64	0	2	32	1.07
6610--6646	15	2.4	16	86	8	51	40	0	8	51	1.32
8250--8343	45	2.2	43	90	7	147	39	20	5	35	1.75
7694--8533	423	2.0	414	93	2	1448	35	14	15	34	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10456--10521	24	2.7	25	95	4	125	43	7	16	31	1.76
10909--10938	13	2.3	13	94	0	51	50	0	16	33	1.46
11050--11104	25	2.3	23	87	9	76	38	14	18	29	1.90
11108--11132	13	1.9	13	100	0	50	0	12	0	88	0.53
11242--11272	15	2.1	15	93	0	53	51	9	6	32	1.60
12785--12827	15	2.9	16	86	10	56	81	16	2	0	0.79
15441--15846	218	1.9	218	96	0	758	26	19	18	35	1.95
31679--31712	14	2.5	13	86	9	50	35	0	0	64	0.94
64394--64590	109	1.8	108	91	4	324	36	12	17	34	1.88
64394--64613	109	2.0	108	87	3	316	39	12	15	32	1.86
74624--74671	24	2.0	24	83	4	60	27	22	14	35	1.93
82994--83020	8	3.4	8	100	0	54	25	22	0	51	1.48
83466--83695	118	1.9	118	94	0	406	37	21	7	33	1.82
84592--84631	2	20.5	2	89	5	64	45	0	2	52	1.14
84958--85255	22	13.3	22	69	16	107	38	10	17	34	1.83
85114--85169	21	2.6	21	83	11	60	39	8	14	37	1.77
85151--85200	26	1.9	26	87	0	73	32	10	32	26	1.89
85315--85458	22	6.8	22	70	13	88	34	11	13	39	1.82
85378--85436	18	3.1	17	74	25	55	33	10	13	42	1.78
85336--85456	40	3.0	40	82	11	131	33	12	13	40	1.82
85381--85493	40	2.8	40	77	10	106	31	11	13	43	1.79
85838--85982	70	2.1	70	97	0	272	25	6	23	44	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
85919--86366	223	2.0	223	96	0	835	32	12	16	38	1.85
86689--86757	21	3.5	20	69	25	58	26	13	8	52	1.69
86691--86767	37	2.1	37	97	0	145	28	11	10	49	1.72
87310--87392	42	2.0	42	90	0	130	20	28	15	34	1.94
87722--87777	27	2.1	27	96	0	103	35	32	1	30	1.68
88128--88324	98	2.0	95	91	2	313	36	14	13	36	1.85
88850--88908	31	1.9	31	82	6	75	27	15	8	49	1.73
90127--90170	23	1.9	23	81	9	54	40	0	0	59	0.98
91313--91373	31	2.0	31	87	6	88	29	21	6	42	1.78
91410--91588	92	1.9	93	89	5	283	32	14	3	49	1.60

Tables:   1

The End!