Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01014020.1 Corchorus olitorius cultivar O-4 contig14053, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  53957

Tables:   1   

This is table  1  of  1  ( 15 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1738--1854
21
5.6
21
88
2
164
27
26
14
31
1.95
8253--8369
21
5.6
21
90
2
173
27
27
14
30
1.95
10654--10697
20
2.1
21
87
4
63
27
34
22
15
1.95
17315--17354
15
2.6
16
92
4
64
65
12
10
12
1.49
22858--22903
21
2.2
21
88
7
67
63
8
2
26
1.35
33258--33548
107
2.6
108
86
5
379
32
11
29
26
1.91
33669--33729
31
2.0
31
87
9
90
39
31
4
24
1.77
37949--38006
19
3.3
19
65
22
54
39
8
25
25
1.84
40806--40962
78
2.1
77
86
6
221
39
8
8
42
1.68
44294--44361
6
11.7
6
81
6
77
73
1
23
1
1.00
44300--44343
11
3.9
11
84
3
52
75
0
22
2
0.92
44292--44375
18
5.1
16
72
9
62
75
1
22
1
0.95
46378--46424
26
1.9
24
87
12
69
27
27
4
40
1.75
50873--50914
15
2.7
15
88
3
57
14
4
14
66
1.40
50886--50914
15
1.9
15
100
0
58
13
6
13
65
1.45

Tables:   1

The End!