Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01014024.1 Corchorus olitorius cultivar O-4 contig14057, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  100061

Tables:   1   

This is table  1  of  1  ( 24 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
883--959
26
2.9
27
84
3
111
16
18
25
38
1.92
3179--3219
21
1.9
22
90
5
66
21
21
9
46
1.80
4234--4267
8
4.2
8
89
10
52
73
0
14
11
1.10
4234--4274
16
2.7
15
85
14
57
70
0
17
12
1.16
4234--4274
8
5.2
8
80
13
50
70
0
17
12
1.16
23330--23371
21
2.0
20
86
13
59
45
4
33
16
1.69
34349--34498
44
3.4
44
80
11
143
38
7
14
39
1.74
34300--34498
22
9.1
22
75
9
119
39
8
16
35
1.79
44816--44842
1
27.0
1
100
0
54
0
100
0
0
0.00
56168--56238
31
2.3
30
78
7
79
23
9
23
42
1.84
65261--65341
40
2.0
40
92
0
135
41
18
12
27
1.86
66098--66136
15
2.6
15
88
8
53
2
10
5
82
0.93
67805--67898
45
2.2
43
83
7
111
38
20
5
36
1.75
69448--69473
12
2.2
12
100
0
52
57
0
7
34
1.27
81956--81986
6
5.2
6
92
0
53
35
0
0
64
0.94
81970--82008
14
2.8
13
88
7
51
46
0
0
53
1.00
87205--87278
24
3.1
24
96
0
139
41
8
14
35
1.76
87213--87276
12
5.3
12
67
14
51
42
9
12
35
1.75
89632--89689
30
1.9
30
92
0
98
37
34
10
17
1.84
93209--93402
96
2.0
94
94
3
336
39
24
10
25
1.87
95302--96166
198
4.3
199
88
4
1155
34
16
14
35
1.89
97561--97588
2
14.0
2
100
0
56
50
0
0
50
1.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
98691--98722
1
32.0
1
93
0
55
0
0
3
96
0.20
99971--100061
2
45.5
2
100
0
182
49
0
50
0
1.00

Tables:   1

The End!