Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01014025.1 Corchorus olitorius cultivar O-4 contig14058, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  30196

Tables:   1   

This is table  1  of  1  ( 19 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1749--1800
27
1.9
27
84
0
68
63
0
7
28
1.22
1752--2384
314
2.0
317
94
1
1103
50
3
10
35
1.56
2432--2614
92
2.0
92
93
0
312
50
1
13
34
1.49
3072--3128
20
2.6
22
81
16
73
31
15
10
42
1.81
6532--6582
19
2.7
19
77
14
61
50
1
0
47
1.12
6938--6963
13
2.0
13
100
0
52
53
30
0
15
1.42
8491--8541
22
2.3
22
83
6
59
43
9
7
39
1.67
21829--21885
18
3.1
19
80
10
64
52
1
0
45
1.11
21827--21887
26
2.4
25
88
5
86
49
1
0
49
1.10
21827--21886
11
5.5
11
71
13
52
50
1
0
48
1.11
21827--21887
15
4.1
15
74
15
56
49
1
0
49
1.10
21834--21887
4
14.2
4
74
18
53
48
1
0
50
1.11
22095--22171
32
2.4
31
85
8
93
25
7
28
37
1.84
22327--22365
20
2.0
20
85
10
53
33
5
5
56
1.43
22391--22430
16
2.6
16
84
4
55
10
7
30
52
1.62
22391--22438
15
3.1
16
82
5
55
12
6
27
54
1.61
28889--28925
19
1.9
19
94
0
65
40
10
0
48
1.38
29601--29714
11
10.8
11
68
9
67
50
1
3
43
1.29
29830--29854
10
2.5
10
100
0
50
52
16
8
24
1.70

Tables:   1

The End!